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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS10055 and RR42_RS10060 are separated by 41 nucleotides
RR42_RS10060 and RR42_RS10065 are separated by 178 nucleotides
RR42_RS10065 and RR42_RS10070 are separated by 229 nucleotides
RR42_RS10070 and RR42_RS10075 are separated by 124 nucleotides
RR42_RS10055: RR42_RS10055 - TetR family transcriptional regulator, at 2,148,916 to 2,149,539
_RS10055
RR42_RS10060: RR42_RS10060 - ferredoxin:oxidoreductase FAD/NAD(P)-binding protein, at 2,149,581 to 2,150,600
_RS10060
RR42_RS10065: RR42_RS10065 - aminobenzoate oxygenase, at 2,150,779 to 2,151,864
_RS10065
RR42_RS10070: RR42_RS10070 - 2-nitropropane dioxygenase, at 2,152,094 to 2,153,044
_RS10070
RR42_RS10075: RR42_RS10075 - hypothetical protein, at 2,153,169 to 2,153,399
_RS10075
Group
Condition
RR42
_RS10055
RR42
_RS10060
RR42
_RS10065
RR42
_RS10070
RR42
_RS10075
stress
R2A with Vancomycin 0.5 mg/ml
-0.0
-0.5
-0.0
-0.1
-0.2
carbon source
D-Lactate (C)
-0.1
-0.3
-0.4
+0.0
+0.1
carbon source
Protocatechuic Acid (C)
-0.1
-0.0
-0.4
-0.3
+0.3
carbon source
Protocatechuic Acid (C)
-0.2
-0.2
+0.3
-0.4
+0.1
stress
R2A with Nickel (II) chloride 0.35 mM
+0.1
-0.1
+0.2
-0.3
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
+0.2
-0.2
+0.0
-0.3
+0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.2
-0.2
+0.1
+0.1
+0.2
stress
R2A with Cisplatin 0.001 mg/ml
+0.0
+0.2
-0.4
+0.2
+0.1
carbon source
4-Hydroxybenzoic Acid (C)
-0.3
+0.1
+0.2
+0.2
-0.1
carbon source
Azelaic (C)
+0.2
-0.2
+0.3
-0.1
+0.0
carbon source
Dodecandioic (C)
+0.2
+0.1
+0.1
-0.3
+0.2
carbon source
Dodecandioic (C)
+0.1
+0.1
+0.4
-0.1
-0.2
carbon source
Pimelic (C)
+0.2
+0.2
-0.2
-0.1
+0.3
carbon source
Carbon source D,L-Lactate 10 mM
+0.1
-0.3
+0.1
+0.3
+0.0
nitrogen source
L-Lysine (N)
-0.2
-0.1
+0.4
+0.0
+0.3
stress
R2A with copper (II) chloride 0.25 mM
-0.0
+0.1
-0.2
+0.3
+0.2
stress
R2A with Lomefloxacin 0.00075 mM
+0.3
+0.0
-0.1
+0.3
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
+0.3
-0.0
-0.2
+0.2
nitrogen source
L-Valine (N)
+0.2
+0.1
+0.3
-0.2
+0.2
carbon source
Valeric (C)
+0.1
+0.3
+0.2
-0.2
-0.0
carbon source
Hexanoic (C)
+0.1
-0.1
+0.3
-0.2
+0.3
carbon source
L-Phenylalanine (C)
-0.1
+0.2
+0.4
+0.1
+0.0
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.4
+0.2
+0.2
-0.3
+0.2
carbon source
butyrate (C)
-0.1
+0.1
+0.3
+0.3
+0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
+0.3
-0.1
+0.2
+0.1
carbon source
Carbon source Phenylacetic 2.5 mM
+0.1
+0.1
+0.6
+0.1
+0.0
stress
R2A with Chlorite 4 mM
+0.2
+0.1
+0.5
-0.0
+0.2
r2a
R2A
+0.1
+0.1
+0.4
+0.2
+0.2
lb
LB
+0.4
-0.3
+0.3
-0.0
+0.7
stress
R2A with Nickel (II) chloride 0.25 mM
+0.1
+0.1
+0.4
+0.3
+0.2
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RR42_RS10065
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