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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS09990 and RR42_RS09995 are separated by 539 nucleotides
RR42_RS09995 and RR42_RS10000 are separated by 107 nucleotides
RR42_RS10000 and RR42_RS10005 are separated by 283 nucleotides
RR42_RS10005 and RR42_RS10010 are separated by 101 nucleotides
RR42_RS09990: RR42_RS09990 - DeoR family transcriptional regulator, at 2,133,913 to 2,135,271
_RS09990
RR42_RS09995: RR42_RS09995 - MBL fold metallo-hydrolase, at 2,135,811 to 2,136,701
_RS09995
RR42_RS10000: RR42_RS10000 - LysR family transcriptional regulator, at 2,136,809 to 2,137,723
_RS10000
RR42_RS10005: RR42_RS10005 - 3-oxoadipate CoA-transferase, at 2,138,007 to 2,138,657
_RS10005
RR42_RS10010: RR42_RS10010 - 3-oxoadipate CoA-transferase, at 2,138,759 to 2,139,421
_RS10010
Group
Condition
RR42
_RS09990
RR42
_RS09995
RR42
_RS10000
RR42
_RS10005
RR42
_RS10010
carbon source
propionate (C)
+0.1
-0.3
-0.4
-0.5
-0.6
stress
R2A with Nickel (II) chloride 0.35 mM
-0.2
+0.2
+0.2
+0.1
-1.8
lb
LB
-0.3
-0.5
-0.8
-0.1
+0.4
carbon source
L-Asparagine (C)
+0.1
+0.1
-0.4
-0.5
-0.6
carbon source
4-Hydroxybenzoic Acid (C)
-0.1
+0.3
-0.4
-0.4
-0.3
nitrogen source
L-Valine (N)
-0.2
+0.4
-0.6
-0.3
-0.1
carbon source
Octanoic (C)
+0.2
+0.3
+0.1
-0.1
-1.1
carbon source
Heptanoic (C)
+0.3
+0.0
-0.2
+0.2
-1.0
stress
R2A with Nickel (II) chloride 0.35 mM
+0.1
+0.1
-0.2
+0.3
-0.9
nitrogen source
D-Alanine (N)
+0.1
+0.4
-0.5
-0.2
-0.3
carbon source
Dodecandioic (C)
+0.1
+0.4
+0.0
+0.2
-1.1
carbon source
Protocatechuic Acid (C)
+0.1
+0.3
-0.8
+0.4
-0.3
carbon source
Valeric (C)
+0.3
+0.0
+0.1
+0.4
-0.7
carbon source
Octanoic (C)
+0.2
+0.0
+0.5
+0.3
-0.7
carbon source
Heptanoic (C)
-0.0
+0.4
+0.3
+0.2
-0.6
carbon source
Suberic (C)
+0.3
+0.3
-0.1
+0.4
-0.5
carbon source
Carbon source Phenylacetic 2.5 mM
-0.0
+0.5
+0.4
+0.2
-0.5
temperature
R2A 23C
+0.4
+0.5
+0.3
-0.3
-0.3
carbon source
succinate (C)
+0.4
+0.3
+0.5
+0.4
-1.0
stress
R2A with copper (II) chloride 0.25 mM
+0.0
+0.5
-0.3
+0.2
+0.5
stress
R2A with Nickel (II) chloride 0.5 mM
+0.3
-0.2
+0.8
-0.0
+0.2
stress
R2A with sodium fluoride 100 mM
-0.1
+0.4
-0.2
+0.4
+0.7
carbon source
L-Asparagine (C)
+0.1
+0.5
+0.3
-0.1
+0.5
nitrogen source
nitrate (N)
+0.3
+0.2
-0.2
+0.5
+0.5
carbon source
Disodium Glutarate (C)
-0.1
+0.3
-0.4
+0.8
+0.8
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.1
+0.8
-0.3
+0.5
+0.5
carbon source
Disodium Glutarate (C)
-0.0
+0.3
+0.6
+0.6
+0.4
stress
R2A with Lomefloxacin 0.00075 mM
+0.3
+0.8
+0.2
+0.3
+0.3
carbon source
adipate (C)
+0.0
-0.1
+0.0
+1.1
+1.3
carbon source
adipate (C)
+0.1
+0.4
+0.0
+1.2
+1.3
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