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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS09945 and RR42_RS09950 are separated by 314 nucleotides
RR42_RS09950 and RR42_RS09955 are separated by 4 nucleotides
RR42_RS09955 and RR42_RS09960 are separated by 193 nucleotides
RR42_RS09960 and RR42_RS09965 are separated by 158 nucleotides
RR42_RS09945: RR42_RS09945 - hypothetical protein, at 2,123,168 to 2,123,533
_RS09945
RR42_RS09950: RR42_RS09950 - cupin, at 2,123,848 to 2,124,252
_RS09950
RR42_RS09955: RR42_RS09955 - alkylhydroperoxidase, at 2,124,257 to 2,124,736
_RS09955
RR42_RS09960: RR42_RS09960 - NmrA family transcriptional regulator, at 2,124,930 to 2,125,682
_RS09960
RR42_RS09965: RR42_RS09965 - DNA-binding protein, at 2,125,841 to 2,127,373
_RS09965
Group
Condition
RR42
_RS09945
RR42
_RS09950
RR42
_RS09955
RR42
_RS09960
RR42
_RS09965
stress
R2A with nitrate 200 mM
-0.9
-0.2
-0.2
-0.4
-0.3
carbon source
L-Glutamine (C)
-0.7
-0.3
+0.0
-0.5
-0.1
carbon source
L-Malic (C)
-0.5
-0.4
-0.2
-0.3
-0.1
stress
R2A with Chloride 300 mM
-0.3
-0.0
-0.1
-0.7
-0.2
carbon source
Octanoic (C)
-0.6
+0.1
-0.3
-0.3
-0.1
stress
R2A with Nickel (II) chloride 0.5 mM
-0.1
+0.1
-0.2
-0.7
-0.3
carbon source
succinate (C)
-0.5
+0.0
-0.2
-0.6
+0.1
nitrogen source
L-Glutamine (N)
-0.6
+0.4
-0.1
-0.6
-0.2
carbon source
Azelaic (C)
-0.7
+0.3
-0.4
-0.1
-0.3
stress
R2A with Vancomycin 0.5 mg/ml
+0.1
-0.3
-0.2
-0.7
+0.1
carbon source
Hexanoic (C)
-0.4
+0.1
-0.2
-0.6
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
-0.2
-0.2
-0.9
+0.2
carbon source
Dodecandioic (C)
-0.7
+0.3
-0.2
-0.3
+0.1
carbon source
Valeric (C)
-0.6
+0.5
-0.4
-0.3
-0.0
carbon source
Dodecandioic (C)
-0.3
+0.0
-0.5
-0.4
+0.3
stress
R2A with Nickel (II) chloride 0.35 mM
+0.2
-0.3
+0.2
-0.0
-0.9
stress
R2A with Cisplatin 0.001 mg/ml
-0.3
-0.6
+0.3
-0.1
+0.0
lb
LB
-1.2
+0.6
+0.2
+0.1
-0.4
carbon source
Octanoic (C)
-0.4
+0.1
+0.0
-0.6
+0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.5
-0.0
+0.0
-1.1
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.5
-0.3
-0.1
+0.0
+0.5
stress
R2A with copper (II) chloride 0.25 mM
-0.6
-0.4
+0.5
+0.0
+0.1
carbon source
L-Tryptophan (C)
+0.5
-0.2
-0.1
-0.4
-0.1
carbon source
L-Malic (C)
+0.3
-0.2
+0.1
-0.6
+0.2
stress
R2A with Nickel (II) chloride 0.35 mM
-0.7
+0.4
+0.2
+0.0
+0.1
carbon source
Protocatechuic Acid (C)
+0.5
+0.2
-0.3
+0.2
-0.2
nitrogen source
D-Alanine (N)
+0.3
-0.1
+0.3
-0.5
+0.5
stress
R2A with Cobalt chloride 0.3 mM
+0.6
+0.6
-0.1
-0.3
-0.2
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.7
+0.4
+0.1
-0.6
+0.2
carbon source
L-Leucine (C)
-0.2
+0.0
+0.2
+0.5
+0.5
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