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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS09920 and RR42_RS09925 are separated by 425 nucleotides
RR42_RS09925 and RR42_RS09930 overlap by 4 nucleotides
RR42_RS09930 and RR42_RS09935 are separated by 483 nucleotides
RR42_RS09935 and RR42_RS09940 are separated by 605 nucleotides
RR42_RS09920: RR42_RS09920 - TetR family transcriptional regulator, at 2,117,150 to 2,117,797
_RS09920
RR42_RS09925: RR42_RS09925 - plasmid stabilization protein, at 2,118,223 to 2,118,477
_RS09925
RR42_RS09930: RR42_RS09930 - plasmid stability protein StbB, at 2,118,474 to 2,118,890
_RS09930
RR42_RS09935: RR42_RS09935 - hypothetical protein, at 2,119,374 to 2,120,297
_RS09935
RR42_RS09940: RR42_RS09940 - gluconolactonase, at 2,120,903 to 2,121,844
_RS09940
Group
Condition
RR42
_RS09920
RR42
_RS09925
RR42
_RS09930
RR42
_RS09935
RR42
_RS09940
carbon source
adipate (C)
-1.6
N.D.
+0.1
-0.2
-0.2
carbon source
L-Alanine (C)
-1.1
N.D.
-0.6
+0.1
-0.0
carbon source
L-Glutamine (C)
-0.9
N.D.
-0.4
-0.2
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-1.3
N.D.
+0.2
-0.1
-0.2
carbon source
D-Fructose (C)
-0.6
N.D.
-0.4
-0.2
-0.2
carbon source
adipate (C)
-1.5
N.D.
+0.4
-0.0
-0.2
carbon source
Heptanoic (C)
-0.7
N.D.
-0.2
-0.2
-0.1
nitrogen source
nitrate (N)
-0.2
N.D.
-0.7
-0.2
+0.1
stress
R2A with Bacitracin 0.5 mg/ml
-0.8
N.D.
-0.3
-0.0
+0.0
carbon source
Protocatechuic Acid (C)
-0.6
N.D.
+0.1
-0.2
-0.4
nitrogen source
L-Citrulline (N)
-0.4
N.D.
-0.7
+0.0
+0.0
carbon source
Pimelic (C)
-0.9
N.D.
+0.2
-0.3
-0.1
carbon source
Protocatechuic Acid (C)
-0.9
N.D.
+0.3
-0.3
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.7
N.D.
+0.2
-0.2
-0.3
carbon source
Hexanoic (C)
-0.8
N.D.
+0.1
-0.0
-0.2
carbon source
Suberic (C)
-0.7
N.D.
-0.4
+0.2
+0.0
carbon source
4-Hydroxybenzoic Acid (C)
-1.0
N.D.
+0.4
-0.3
+0.0
carbon source
Dodecandioic (C)
-0.9
N.D.
-0.2
+0.3
-0.1
carbon source
Pimelic (C)
-1.1
N.D.
+0.3
+0.0
+0.0
stress
R2A with Cisplatin 0.001 mg/ml
-0.0
N.D.
-0.9
+0.1
+0.1
nitrogen source
D-Alanine (N)
-0.6
N.D.
-0.4
+0.0
+0.2
carbon source
Hexanoic (C)
-0.8
N.D.
+0.4
-0.1
-0.2
nitrogen source
L-Lysine (N)
-0.8
N.D.
+0.2
-0.2
+0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.6
N.D.
+0.4
-0.4
+0.0
carbon source
Octanoic (C)
-0.8
N.D.
+0.4
-0.1
-0.1
carbon source
succinate (C)
-0.8
N.D.
+0.3
+0.0
+0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.5
N.D.
+0.6
-0.2
-0.2
lb
LB
+0.3
N.D.
-0.8
+0.1
+0.1
carbon source
a-Ketoglutaric (C)
-0.2
N.D.
+0.5
-0.4
-0.2
carbon source
Disodium Glutarate (C)
-0.7
N.D.
+0.5
+0.0
-0.0
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