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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS09805 and RR42_RS09810 are separated by 89 nucleotides
RR42_RS09810 and RR42_RS09815 are separated by 189 nucleotides
RR42_RS09815 and RR42_RS09820 are separated by 724 nucleotides
RR42_RS09820 and RR42_RS09825 are separated by 45 nucleotides
RR42_RS09805: RR42_RS09805 - hypothetical protein, at 2,088,866 to 2,089,165
_RS09805
RR42_RS09810: RR42_RS09810 - hypothetical protein, at 2,089,255 to 2,089,539
_RS09810
RR42_RS09815: RR42_RS09815 - diguanylate cyclase, at 2,089,729 to 2,092,371
_RS09815
RR42_RS09820: RR42_RS09820 - hypothetical protein, at 2,093,096 to 2,093,572
_RS09820
RR42_RS09825: RR42_RS09825 - hypothetical protein, at 2,093,618 to 2,093,821
_RS09825
Group
Condition
RR42
_RS09805
RR42
_RS09810
RR42
_RS09815
RR42
_RS09820
RR42
_RS09825
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.1
-0.2
+0.1
-0.5
-0.6
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.2
+0.3
-0.0
-0.8
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
-0.1
+0.1
-0.2
-0.6
nitrogen source
L-Glutamine (N)
-0.1
-0.1
+0.1
-0.1
-0.7
r2a
R2A
+0.1
+0.0
-0.1
-0.6
-0.3
stress
R2A with Lomefloxacin 0.001 mM
-0.2
+0.5
-0.4
-0.6
-0.1
stress
R2A with copper (II) chloride 0.25 mM
-0.0
-0.0
+0.0
-1.0
+0.2
carbon source
D,L-Lactate (C)
-0.1
-0.2
+0.0
-0.5
+0.2
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.2
-0.3
+0.0
-0.6
+0.0
carbon source
4-Hydroxybenzoic Acid (C)
-0.2
-0.3
+0.1
-0.3
+0.2
carbon source
L-Histidine (C)
+0.1
-0.1
-0.1
-0.4
+0.4
nitrogen source
casaminos (N)
-0.0
+0.2
-0.1
+0.4
-0.5
nitrogen source
L-Leucine (N)
+0.3
-0.5
+0.1
+0.2
-0.2
stress
R2A with Lomefloxacin 0.00075 mM
-0.1
+0.7
-0.1
-0.4
+0.1
carbon source
Protocatechuic Acid (C)
-0.2
+0.4
+0.2
+0.5
-0.6
carbon source
pyruvate (C)
-0.0
-0.4
+0.2
+0.6
-0.1
carbon source
adipate (C)
-0.1
+0.3
+0.0
+0.6
-0.4
carbon source
propionate (C)
-0.0
-0.0
+0.0
+0.7
-0.3
carbon source
L-Tryptophan (C)
-0.0
-0.3
+0.1
+0.5
+0.1
carbon source
D,L-Lactate (C)
+0.1
-0.1
+0.1
+0.5
-0.3
nitrogen source
L-Leucine (N)
+0.1
+0.4
+0.0
-0.3
+0.3
carbon source
Valeric (C)
+0.4
+0.2
+0.0
+0.3
-0.2
lb
LB
-0.2
+0.5
+0.0
+0.6
-0.1
carbon source
L-Alanine (C)
+0.2
-0.3
+0.1
+0.6
+0.1
carbon source
L-Histidine (C)
+0.1
+0.1
+0.2
+0.6
-0.1
carbon source
Octanoic (C)
-0.0
+0.1
+0.7
+0.4
-0.2
nitrogen source
L-Valine (N)
+0.1
+0.3
+0.1
+0.5
+0.1
nitrogen source
D-Alanine (N)
+0.2
+0.0
+0.0
+0.3
+0.6
carbon source
Octanoic (C)
+0.0
+0.1
+0.7
+0.5
+0.1
carbon source
Heptanoic (C)
+0.1
+0.1
+0.3
+0.9
-0.0
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