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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS09605 and RR42_RS09610 are separated by 11 nucleotides
RR42_RS09610 and RR42_RS09615 overlap by 4 nucleotides
RR42_RS09615 and RR42_RS09620 are separated by 308 nucleotides
RR42_RS09620 and RR42_RS09625 are separated by 35 nucleotides
RR42_RS09605: RR42_RS09605 - hypothetical protein, at 2,033,249 to 2,034,085
_RS09605
RR42_RS09610: RR42_RS09610 - mRNA 3'-end processing factor, at 2,034,097 to 2,035,455
_RS09610
RR42_RS09615: RR42_RS09615 - hypothetical protein, at 2,035,452 to 2,035,937
_RS09615
RR42_RS09620: RR42_RS09620 - hypothetical protein, at 2,036,246 to 2,037,505
_RS09620
RR42_RS09625: RR42_RS09625 - cation transporter, at 2,037,541 to 2,039,841
_RS09625
Group
Condition
RR42
_RS09605
RR42
_RS09610
RR42
_RS09615
RR42
_RS09620
RR42
_RS09625
nitrogen source
L-Leucine (N)
-0.2
-0.0
N.D.
-0.4
-0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.4
-0.3
N.D.
-0.3
+0.2
nitrogen source
L-Serine (N)
-0.0
+0.1
N.D.
-0.7
-0.3
temperature
R2A 37C
-0.1
-0.3
N.D.
+0.2
-0.7
nitrogen source
L-Isoleucine (N)
-0.3
+0.1
N.D.
-0.4
-0.3
nitrogen source
L-Serine (N)
+0.1
-0.0
N.D.
-0.6
-0.3
carbon source
propionate (C)
+0.2
+0.1
N.D.
-0.5
-0.4
nitrogen source
D-Alanine (N)
+0.3
-0.1
N.D.
-0.7
-0.1
nitrogen source
casaminos (N)
-0.2
+0.3
N.D.
-0.4
-0.2
nitrogen source
nitrate (N)
+0.3
-0.1
N.D.
-0.3
-0.3
carbon source
Protocatechuic Acid (C)
+0.3
-0.5
N.D.
+0.1
-0.3
carbon source
Pimelic (C)
-0.5
-0.1
N.D.
+0.3
+0.3
stress
R2A with Nickel (II) chloride 0.35 mM
+0.4
+0.2
N.D.
-0.2
-0.5
carbon source
L-Asparagine (C)
+0.6
-0.2
N.D.
-0.3
-0.2
carbon source
4-Hydroxybenzoic Acid (C)
+0.4
-0.0
N.D.
-0.6
+0.1
carbon source
L-Leucine (C)
+0.5
-0.1
N.D.
-0.2
-0.3
carbon source
propionate (C)
-0.4
-0.1
N.D.
+0.2
+0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
-0.5
N.D.
+0.3
+0.1
carbon source
Protocatechuic Acid (C)
-0.4
-0.2
N.D.
+0.8
+0.0
carbon source
Heptanoic (C)
-0.3
-0.2
N.D.
+0.6
+0.3
nitrogen source
L-Glutamine (N)
+0.1
-0.0
N.D.
+0.6
-0.3
stress
R2A with Cobalt chloride 0.5 mM
+0.3
+0.1
N.D.
+0.5
-0.4
carbon source
L-Glutamine (C)
+0.4
-0.1
N.D.
+0.4
-0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.5
+0.1
N.D.
+0.3
-0.3
stress
R2A with Cisplatin 0.001 mg/ml
+0.7
+0.2
N.D.
-0.3
+0.2
stress
R2A with Dimethyl Sulfoxide 5 vol%
+0.2
+0.2
N.D.
+0.6
-0.1
stress
R2A with Sisomicin 0.035 mg/ml
+0.6
+0.2
N.D.
+0.1
-0.0
carbon source
L-Lactate (C)
+0.7
+0.1
N.D.
+0.1
-0.0
lb
LB
+0.7
+0.1
N.D.
+0.3
+0.0
carbon source
Trisodium citrate (C)
+0.9
+0.2
N.D.
+0.5
+0.1
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