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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS09565 and RR42_RS09570 are separated by 36 nucleotides
RR42_RS09570 and RR42_RS09575 are separated by 198 nucleotides
RR42_RS09575 and RR42_RS09580 overlap by 4 nucleotides
RR42_RS09580 and RR42_RS09585 are separated by 268 nucleotides
RR42_RS09565: RR42_RS09565 - hypothetical protein, at 2,026,422 to 2,026,952
_RS09565
RR42_RS09570: RR42_RS09570 - hypothetical protein, at 2,026,989 to 2,028,572
_RS09570
RR42_RS09575: RR42_RS09575 - hypothetical protein, at 2,028,771 to 2,029,058
_RS09575
RR42_RS09580: RR42_RS09580 - hypothetical protein, at 2,029,055 to 2,029,336
_RS09580
RR42_RS09585: RR42_RS09585 - Crp/Fnr family transcriptional regulator, at 2,029,605 to 2,030,363
_RS09585
Group
Condition
RR42
_RS09565
RR42
_RS09570
RR42
_RS09575
RR42
_RS09580
RR42
_RS09585
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.5
+0.0
+0.4
-3.9
-0.8
carbon source
propionate (C)
-0.3
-0.5
-0.5
-1.9
-0.3
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.2
-0.1
-0.3
-1.2
-1.0
stress
R2A with Lomefloxacin 0.001 mM
-1.1
-0.6
-0.2
-1.3
+0.4
carbon source
L-Asparagine (C)
-0.1
-0.1
-0.3
-2.3
+0.2
carbon source
Heptanoic (C)
+0.6
-0.1
-0.1
-2.8
-0.0
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.2
-0.2
-0.5
-0.8
-0.5
temperature
R2A 23C
+0.0
-0.3
+0.1
-1.9
+0.0
stress
R2A with D-Cycloserine 0.01 mg/ml
-0.7
-0.3
+0.1
-0.7
-0.3
carbon source
adipate (C)
+0.8
+0.1
+0.1
-2.4
-0.6
carbon source
L-Lactate (C)
+0.6
-0.4
-0.5
-0.6
-0.8
carbon source
4-Hydroxybenzoic Acid (C)
-0.8
+0.2
+0.4
-1.1
-0.3
carbon source
adipate (C)
+0.1
-0.4
+0.4
-1.0
-0.7
carbon source
Pimelic (C)
+0.3
+0.1
+0.3
-2.2
-0.2
stress
R2A with Zinc 0.1 mM
+0.9
+0.1
-0.4
-2.3
+0.3
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
+0.1
+0.2
+0.3
-1.6
-0.3
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.1
-0.2
+0.2
-1.5
+0.3
carbon source
D-Gluconic Acid (C)
-0.4
+0.1
+0.4
-1.0
-0.3
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.4
+0.1
+0.0
-1.6
+0.8
carbon source
Suberic (C)
+0.8
-0.0
+0.3
-1.3
-0.6
stress
R2A with Nickel (II) chloride 0.25 mM
+0.1
+0.4
+0.3
-1.7
-0.0
carbon source
succinate (C)
+0.7
-0.3
+0.0
-1.1
-0.0
carbon source
Azelaic (C)
+0.6
+0.1
-0.6
-1.0
+0.1
nitrogen source
L-Phenylalanine (N)
+1.0
+0.0
+0.3
-0.6
-1.2
carbon source
Carbon source Phenylacetic 2.5 mM
+0.2
+0.3
+0.4
+0.2
-1.3
carbon source
L-Asparagine (C)
+0.0
+0.2
+0.4
-1.2
+0.5
carbon source
Valeric (C)
+0.6
+0.3
+0.3
-0.4
-0.6
stress
R2A with sodium fluoride 100 mM
-0.3
+0.5
+0.3
+0.9
-0.5
carbon source
Protocatechuic Acid (C)
+1.4
-0.2
+0.1
-0.8
+0.3
nitrogen source
L-Leucine (N)
-0.2
-0.4
+0.4
+0.9
+0.4
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