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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS09550 and RR42_RS09555 are separated by 276 nucleotides
RR42_RS09555 and RR42_RS09560 overlap by 4 nucleotides
RR42_RS09560 and RR42_RS09565 are separated by 10 nucleotides
RR42_RS09565 and RR42_RS09570 are separated by 36 nucleotides
RR42_RS09550: RR42_RS09550 - universal stress protein UspA, at 2,024,574 to 2,025,029
_RS09550
RR42_RS09555: RR42_RS09555 - universal stress protein UspA, at 2,025,306 to 2,025,806
_RS09555
RR42_RS09560: RR42_RS09560 - hypothetical protein, at 2,025,803 to 2,026,411
_RS09560
RR42_RS09565: RR42_RS09565 - hypothetical protein, at 2,026,422 to 2,026,952
_RS09565
RR42_RS09570: RR42_RS09570 - hypothetical protein, at 2,026,989 to 2,028,572
_RS09570
Group
Condition
RR42
_RS09550
RR42
_RS09555
RR42
_RS09560
RR42
_RS09565
RR42
_RS09570
stress
R2A with Vancomycin 0.5 mg/ml
+0.0
-2.2
-0.1
+0.1
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.7
-1.1
+0.3
-0.2
-0.3
stress
R2A with Chloride 300 mM
+0.0
+0.0
-1.5
-0.6
+0.0
stress
R2A with Lomefloxacin 0.001 mM
-0.1
-0.6
+0.6
-1.1
-0.6
carbon source
Carbon source Phenylacetic 2.5 mM
-0.0
-1.5
-0.6
+0.6
-0.2
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.2
-1.8
+0.5
-0.6
+0.0
carbon source
4-Hydroxybenzoic Acid (C)
-0.1
-1.5
-0.0
+0.4
-0.2
carbon source
D-Lactate (C)
-0.4
-0.9
-0.3
+0.5
-0.4
carbon source
Carbon source Phenylacetic 2.5 mM
-0.1
-0.8
-0.9
+0.2
+0.3
nitrogen source
L-Isoleucine (N)
+0.0
-1.4
-0.2
+0.8
-0.4
stress
R2A with Cisplatin 0.001 mg/ml
-0.2
-1.6
+0.1
+0.6
-0.1
stress
R2A with Zinc 0.1 mM
+0.1
-2.0
-0.1
+0.9
+0.1
carbon source
L-Leucine (C)
-0.1
-1.4
-0.0
+0.2
+0.4
nitrogen source
L-Serine (N)
+0.1
-1.1
-0.3
+0.5
-0.2
carbon source
pyruvate (C)
-0.2
-0.7
-0.5
+0.5
+0.2
carbon source
L-Tryptophan (C)
-0.1
-1.4
-0.1
+0.7
+0.3
carbon source
L-Lactate (C)
-0.3
-0.6
+0.1
+0.6
-0.4
nitrogen source
nitrate (N)
-0.2
-0.4
+0.0
+0.8
-0.7
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.2
-1.0
-0.1
+0.4
+0.3
nitrogen source
L-Glutamine (N)
+0.2
-1.2
+0.4
+0.6
+0.0
carbon source
4-Hydroxybenzoic Acid (C)
-0.2
+0.6
+0.4
-0.8
+0.2
lb
LB
+0.1
+0.9
+0.2
-0.5
-0.2
nitrogen source
L-Valine (N)
-0.2
+1.1
-0.2
-0.2
+0.3
carbon source
Protocatechuic Acid (C)
+0.1
-0.8
+0.6
+1.4
-0.2
carbon source
Azelaic (C)
-0.0
+0.5
+0.2
+0.8
-0.5
carbon source
Ethanol (C)
-0.1
+0.8
-0.4
+0.4
+0.5
carbon source
Hexanoic (C)
+0.1
+0.7
+0.1
+0.8
-0.3
carbon source
L-Alanine (C)
-0.1
+1.5
-0.2
+0.1
+0.2
carbon source
Dodecandioic (C)
+0.1
+0.9
+0.2
+0.8
-0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
+0.9
+1.0
+0.3
+0.2
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