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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS09535 and RR42_RS09540 are separated by 260 nucleotides
RR42_RS09540 and RR42_RS09545 are separated by 34 nucleotides
RR42_RS09545 and RR42_RS09550 are separated by 109 nucleotides
RR42_RS09550 and RR42_RS09555 are separated by 276 nucleotides
RR42_RS09535: RR42_RS09535 - AraC family transcriptional regulator, at 2,020,976 to 2,022,025
_RS09535
RR42_RS09540: RR42_RS09540 - twin-arginine translocation pathway signal protein, at 2,022,286 to 2,022,846
_RS09540
RR42_RS09545: RR42_RS09545 - peptidase, at 2,022,881 to 2,024,464
_RS09545
RR42_RS09550: RR42_RS09550 - universal stress protein UspA, at 2,024,574 to 2,025,029
_RS09550
RR42_RS09555: RR42_RS09555 - universal stress protein UspA, at 2,025,306 to 2,025,806
_RS09555
Group
Condition
RR42
_RS09535
RR42
_RS09540
RR42
_RS09545
RR42
_RS09550
RR42
_RS09555
stress
R2A with Zinc 0.1 mM
+0.2
-0.1
-0.5
+0.1
-2.0
stress
R2A with Lomefloxacin 0.001 mM
-0.7
-0.3
-0.5
-0.1
-0.6
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.2
-0.0
-0.1
+0.2
-1.8
stress
R2A with Vancomycin 0.5 mg/ml
+0.2
+0.3
-0.1
+0.0
-2.2
carbon source
L-Tryptophan (C)
-0.0
+0.0
-0.1
-0.1
-1.4
r2a
R2A
-0.2
-0.4
-0.0
-0.3
-0.5
nitrogen source
L-Isoleucine (N)
-0.2
+0.0
+0.0
+0.0
-1.4
carbon source
Carbon source Phenylacetic 2.5 mM
+0.1
-0.2
+0.2
-0.0
-1.5
stress
R2A with Chloride 300 mM
+0.1
+0.1
-0.2
-0.1
-1.2
carbon source
L-Leucine (C)
-0.1
+0.2
+0.2
-0.1
-1.4
carbon source
4-Hydroxybenzoic Acid (C)
+0.1
+0.4
+0.0
-0.1
-1.5
carbon source
D-Lactate (C)
+0.1
+0.2
-0.0
-0.4
-0.9
stress
R2A with Cisplatin 0.001 mg/ml
+0.1
+0.8
-0.3
-0.2
-1.6
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.1
+0.6
+0.5
-0.7
-1.1
carbon source
Protocatechuic Acid (C)
-0.3
+0.0
+0.4
+0.1
-0.8
carbon source
L-Lactate (C)
+0.3
+0.2
-0.2
-0.3
-0.6
nitrogen source
L-Glutamine (N)
-0.2
+0.4
+0.1
+0.2
-1.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.1
+0.0
+0.1
+0.2
-1.0
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.0
+0.4
-0.3
-0.4
-0.2
carbon source
Carbon source D,L-Lactate 10 mM
+0.3
-0.4
+0.4
-0.0
-0.5
stress
R2A with Bacitracin 0.5 mg/ml
-0.2
-0.3
-0.3
-0.1
+0.8
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.4
+0.5
-0.4
+0.1
-0.6
carbon source
a-Ketoglutaric (C)
+0.4
+0.7
-0.3
-0.3
-0.1
carbon source
butyrate (C)
-0.1
-0.3
-0.0
-0.1
+1.2
carbon source
Octanoic (C)
+0.1
-0.2
-0.1
-0.0
+1.1
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
+0.2
-0.2
-0.3
+0.1
+1.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
+0.6
-0.4
-0.1
+0.9
nitrogen source
L-Valine (N)
+0.1
+0.1
-0.2
-0.2
+1.1
carbon source
L-Alanine (C)
-0.0
+0.2
+0.1
-0.1
+1.5
lb
LB
+0.1
+0.4
+0.5
+0.1
+0.9
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