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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS09380 and RR42_RS09385 are separated by 64 nucleotides
RR42_RS09385 and RR42_RS09390 are separated by 311 nucleotides
RR42_RS09390 and RR42_RS09395 are separated by 111 nucleotides
RR42_RS09395 and RR42_RS09400 are separated by 343 nucleotides
RR42_RS09380: RR42_RS09380 - quinone oxidoreductase, at 1,985,149 to 1,986,129
_RS09380
RR42_RS09385: RR42_RS09385 - hypothetical protein, at 1,986,194 to 1,987,141
_RS09385
RR42_RS09390: RR42_RS09390 - LuxR family transcriptional regulator, at 1,987,453 to 1,990,155
_RS09390
RR42_RS09395: RR42_RS09395 - multidrug transporter MatE, at 1,990,267 to 1,991,580
_RS09395
RR42_RS09400: RR42_RS09400 - membrane protein, at 1,991,924 to 1,993,072
_RS09400
Group
Condition
RR42
_RS09380
RR42
_RS09385
RR42
_RS09390
RR42
_RS09395
RR42
_RS09400
carbon source
Dodecandioic (C)
-0.3
-0.6
-0.0
-0.5
-0.3
carbon source
Disodium Glutarate (C)
-0.4
-0.1
+0.1
-0.3
-0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.0
-0.8
-0.0
-0.2
+0.0
carbon source
succinate (C)
-0.3
-0.3
-0.1
-0.2
-0.1
carbon source
Protocatechuic Acid (C)
+0.1
-0.6
+0.1
-0.7
+0.0
lb
LB
-0.1
-1.0
+0.1
+0.1
-0.1
stress
R2A with nitrate 200 mM
-0.3
-0.3
-0.2
-0.1
-0.1
carbon source
Heptanoic (C)
-0.4
-0.3
-0.1
-0.1
-0.1
stress
R2A with Nickel (II) chloride 0.35 mM
-0.2
-0.1
-0.1
-0.7
+0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.4
-0.1
-0.1
-0.4
+0.1
carbon source
Suberic (C)
+0.1
-0.5
-0.1
-0.1
-0.2
nitrogen source
L-Asparagine (N)
-0.5
-0.2
-0.0
-0.3
+0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.2
-0.4
+0.1
-0.5
-0.0
carbon source
L-Proline (C)
-0.7
+0.1
-0.0
-0.1
+0.2
carbon source
D-Fructose (C)
-0.4
+0.1
+0.1
-0.4
+0.2
stress
R2A with Cobalt chloride 0.3 mM
-0.4
+0.1
+0.1
-0.3
+0.1
carbon source
Hexanoic (C)
+0.2
-0.7
-0.1
+0.2
-0.0
carbon source
Dodecandioic (C)
-0.2
+0.2
+0.1
-0.4
-0.1
carbon source
L-Threonine (C)
-0.3
+0.2
+0.1
-0.1
-0.2
stress
R2A with Cobalt chloride 0.5 mM
-0.4
+0.5
-0.2
-0.3
+0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.3
-0.3
-0.1
-0.1
+0.3
stress
R2A with Chlorite 4 mM
-0.2
+0.3
+0.3
-0.2
-0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.4
-0.5
+0.3
-0.4
+0.2
nitrogen source
L-Glutamine (N)
-0.0
+0.5
-0.4
+0.5
-0.3
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.6
-0.5
-0.2
+0.4
+0.1
stress
R2A with Cisplatin 0.001 mg/ml
-0.2
+0.4
+0.2
-0.2
+0.2
nitrogen source
casaminos (N)
+0.2
+0.5
-0.3
+0.2
+0.1
nitrogen source
L-Leucine (N)
+0.5
+0.4
-0.2
+0.1
+0.1
nitrogen source
L-Phenylalanine (N)
+0.6
+0.2
-0.2
+0.3
-0.0
nitrogen source
nitrite (N)
+0.4
+0.3
-0.2
+0.1
+0.3
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