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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS09200 and RR42_RS09205 are separated by 3 nucleotides
RR42_RS09205 and RR42_RS09210 are separated by 15 nucleotides
RR42_RS09210 and RR42_RS09215 are separated by 4 nucleotides
RR42_RS09215 and RR42_RS09220 are separated by 71 nucleotides
RR42_RS09200: RR42_RS09200 - membrane protein, at 1,945,364 to 1,946,965
_RS09200
RR42_RS09205: RR42_RS09205 - cytochrome C oxidase, at 1,946,969 to 1,947,571
_RS09205
RR42_RS09210: RR42_RS09210 - cbb3-type cytochrome C oxidase subunit III, at 1,947,587 to 1,948,195
_RS09210
RR42_RS09215: RR42_RS09215 - hypothetical protein, at 1,948,200 to 1,948,835
_RS09215
RR42_RS09220: RR42_RS09220 - hypothetical protein, at 1,948,907 to 1,949,428
_RS09220
Group
Condition
RR42
_RS09200
RR42
_RS09205
RR42
_RS09210
RR42
_RS09215
RR42
_RS09220
stress
R2A with nitrate 150 mM
-0.2
-0.3
-0.6
-0.1
+0.0
carbon source
L-Proline (C)
+0.0
-0.1
-0.2
-0.4
-0.4
stress
R2A with Nickel (II) chloride 0.5 mM
-0.4
+0.1
-0.0
-0.2
-0.4
carbon source
L-Histidine (C)
+0.2
-0.1
-0.3
-0.3
-0.4
nitrogen source
L-Lysine (N)
+0.0
-0.3
-0.1
-0.8
+0.3
carbon source
4-Hydroxybenzoic Acid (C)
+0.2
-0.2
-0.1
-0.7
-0.1
nitrogen source
L-Isoleucine (N)
+0.1
+0.1
-0.2
-0.3
-0.5
carbon source
D,L-Lactate (C)
+0.2
+0.1
-0.3
-0.5
-0.3
carbon source
L-Tryptophan (C)
+0.1
-0.2
-0.2
-0.3
-0.2
nitrogen source
L-Valine (N)
-0.2
+0.1
-0.2
-0.5
+0.0
carbon source
D,L-Lactate (C)
+0.1
-0.1
-0.5
+0.2
-0.4
carbon source
L-Alanine (C)
+0.1
+0.0
+0.2
-0.2
-0.5
stress
R2A with Lomefloxacin 0.001 mM
-0.3
+0.1
+0.4
-0.2
-0.5
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.3
-0.3
+0.3
+0.1
-0.2
stress
R2A with Cobalt chloride 0.3 mM
-0.2
-0.5
+0.3
-0.3
+0.3
carbon source
adipate (C)
+0.2
-0.1
+0.2
-0.4
-0.2
carbon source
propionate (C)
+0.1
+0.2
-0.3
+0.2
-0.4
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.3
-0.1
+0.5
-0.0
-0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.0
-0.3
+0.3
+0.3
-0.4
carbon source
Protocatechuic Acid (C)
+0.3
-0.2
+0.2
-0.1
-0.3
stress
R2A with Chloride 300 mM
+0.2
+0.2
+0.2
-0.7
+0.0
stress
R2A with Nickel (II) chloride 0.35 mM
+0.2
+0.1
+0.3
-0.3
-0.1
carbon source
Suberic (C)
+0.1
-0.2
-0.1
+0.5
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.4
+0.0
+0.3
+0.4
-0.1
carbon source
L-Lactate (C)
+0.2
+0.4
-0.3
+0.3
-0.1
carbon source
Suberic (C)
+0.2
+0.2
-0.3
+0.3
+0.1
carbon source
Disodium Glutarate (C)
+0.2
+0.2
+0.2
+0.3
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
+0.0
+0.3
-0.2
+0.3
carbon source
4-Hydroxybenzoic Acid (C)
+0.2
+0.0
+0.2
+0.5
+0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.1
+0.0
+0.4
+0.2
+0.5
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