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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS09145 and RR42_RS09150 are separated by 246 nucleotides
RR42_RS09150 and RR42_RS09155 are separated by 29 nucleotides
RR42_RS09155 and RR42_RS09160 are separated by 61 nucleotides
RR42_RS09160 and RR42_RS09165 are separated by 147 nucleotides
RR42_RS09145: RR42_RS09145 - hypothetical protein, at 1,934,360 to 1,934,653
_RS09145
RR42_RS09150: RR42_RS09150 - molybdopterin-binding protein, at 1,934,900 to 1,935,652
_RS09150
RR42_RS09155: RR42_RS09155 - thioredoxin reductase, at 1,935,682 to 1,936,329
_RS09155
RR42_RS09160: RR42_RS09160 - hypothetical protein, at 1,936,391 to 1,937,032
_RS09160
RR42_RS09165: RR42_RS09165 - transcriptional regulator, at 1,937,180 to 1,937,851
_RS09165
Group
Condition
RR42
_RS09145
RR42
_RS09150
RR42
_RS09155
RR42
_RS09160
RR42
_RS09165
stress
R2A with Lomefloxacin 0.00075 mM
-0.2
-0.5
-0.1
-0.4
-0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.7
-0.0
+0.0
-0.4
-0.4
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.1
-0.1
-0.6
-0.1
-0.7
nitrogen source
casaminos (N)
-0.3
-0.2
-0.1
-0.3
-0.2
carbon source
D-Lactate (C)
+0.1
-0.8
-0.3
-0.0
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
-0.5
-0.3
-0.2
-0.1
+0.1
stress
R2A with Vancomycin 0.5 mg/ml
-0.2
+0.3
-0.2
-0.6
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.6
+0.2
+0.2
-0.6
-0.1
nitrogen source
nitrite (N)
-0.2
-0.1
-0.2
-0.5
+0.3
stress
R2A with Cobalt chloride 0.5 mM
-0.2
+0.3
-0.3
-0.0
-0.5
nitrogen source
L-Glutamine (N)
-0.6
+0.1
+0.2
-0.3
-0.0
carbon source
propionate (C)
+0.2
-0.2
+0.1
-0.1
-0.4
carbon source
Octanoic (C)
-0.5
-0.2
+0.1
-0.1
+0.2
stress
R2A with Cobalt chloride 0.3 mM
-0.2
+0.1
-0.2
-0.3
+0.3
carbon source
adipate (C)
-0.4
-0.2
+0.1
+0.2
+0.2
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.5
+0.1
-0.2
+0.0
-0.5
carbon source
Hexanoic (C)
-0.3
-0.3
+0.2
+0.1
+0.3
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.3
-0.2
+0.1
+0.3
-0.5
lb
LB
+0.8
-0.4
-0.2
-0.1
-0.1
carbon source
L-Malic (C)
+0.1
+0.6
-0.2
+0.0
-0.4
nitrogen source
L-Phenylalanine (N)
+0.2
+0.2
-0.1
-0.5
+0.4
carbon source
adipate (C)
-0.3
-0.1
+0.0
+0.1
+0.6
nitrogen source
L-Tryptophan (N)
+0.3
-0.2
-0.0
-0.3
+0.4
stress
R2A with A22 0.01 mg/ml
+0.4
+0.3
-0.1
+0.1
-0.3
carbon source
Suberic (C)
-0.5
+0.3
+0.1
+0.4
+0.2
stress
R2A with copper (II) chloride 0.25 mM
+0.3
+0.2
+0.3
+0.1
-0.3
carbon source
Octanoic (C)
-0.5
+0.4
+0.3
+0.3
+0.2
stress
R2A with Cisplatin 0.001 mg/ml
+0.8
+0.4
+0.2
-0.3
-0.3
carbon source
D-Lactate (C)
+0.5
+0.1
-0.2
+0.3
+0.3
carbon source
a-Ketoglutaric (C)
+0.7
+0.3
-0.2
-0.1
+0.2
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