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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS09015 and RR42_RS09020 are separated by 73 nucleotides
RR42_RS09020 and RR42_RS09025 are separated by 246 nucleotides
RR42_RS09025 and RR42_RS09030 are separated by 249 nucleotides
RR42_RS09030 and RR42_RS09035 are separated by 296 nucleotides
RR42_RS09015: RR42_RS09015 - trigger factor, at 1,894,180 to 1,895,541
_RS09015
RR42_RS09020: RR42_RS09020 - Clp protease ClpP, at 1,895,615 to 1,896,265
_RS09020
RR42_RS09025: RR42_RS09025 - Clp protease ATP-binding protein, at 1,896,512 to 1,897,786
_RS09025
RR42_RS09030: RR42_RS09030 - DNA-binding protein, at 1,898,036 to 1,900,447
_RS09030
RR42_RS09035: RR42_RS09035 - tRNA-Val, at 1,900,744 to 1,900,819
_RS09035
Group
Condition
RR42
_RS09015
RR42
_RS09020
RR42
_RS09025
RR42
_RS09030
RR42
_RS09035
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-5.3
N.D.
N.D.
N.D.
N.D.
carbon source
Octanoic (C)
-4.9
N.D.
N.D.
N.D.
N.D.
carbon source
Disodium Glutarate (C)
-3.6
N.D.
N.D.
N.D.
N.D.
carbon source
Suberic (C)
-3.4
N.D.
N.D.
N.D.
N.D.
carbon source
adipate (C)
-3.2
N.D.
N.D.
N.D.
N.D.
carbon source
adipate (C)
-2.9
N.D.
N.D.
N.D.
N.D.
stress
R2A with Chloride 300 mM
-2.6
N.D.
N.D.
N.D.
N.D.
nitrogen source
nitrate (N)
-2.5
N.D.
N.D.
N.D.
N.D.
stress
R2A with Cobalt chloride 0.5 mM
-2.5
N.D.
N.D.
N.D.
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
-2.3
N.D.
N.D.
N.D.
N.D.
stress
R2A with copper (II) chloride 0.25 mM
-2.3
N.D.
N.D.
N.D.
N.D.
stress
R2A with nitrate 200 mM
-2.1
N.D.
N.D.
N.D.
N.D.
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-2.1
N.D.
N.D.
N.D.
N.D.
carbon source
Dodecandioic (C)
-2.1
N.D.
N.D.
N.D.
N.D.
stress
R2A with Sisomicin 0.035 mg/ml
-2.0
N.D.
N.D.
N.D.
N.D.
carbon source
Pimelic (C)
-2.0
N.D.
N.D.
N.D.
N.D.
nitrogen source
Glucuronamide (N)
-2.0
N.D.
N.D.
N.D.
N.D.
temperature
R2A 23C
-1.9
N.D.
N.D.
N.D.
N.D.
nitrogen source
casaminos (N)
-1.9
N.D.
N.D.
N.D.
N.D.
carbon source
Disodium Glutarate (C)
-1.9
N.D.
N.D.
N.D.
N.D.
carbon source
Suberic (C)
-1.8
N.D.
N.D.
N.D.
N.D.
carbon source
D,L-Lactate (C)
-1.7
N.D.
N.D.
N.D.
N.D.
carbon source
Octanoic (C)
-1.6
N.D.
N.D.
N.D.
N.D.
carbon source
Valeric (C)
-1.6
N.D.
N.D.
N.D.
N.D.
stress
R2A with Paraquat dichloride 0.064 mg/ml
-1.6
N.D.
N.D.
N.D.
N.D.
stress
R2A with Lomefloxacin 0.00075 mM
+1.6
N.D.
N.D.
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+1.7
N.D.
N.D.
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+1.8
N.D.
N.D.
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+2.4
N.D.
N.D.
N.D.
N.D.
stress
R2A with Lomefloxacin 0.001 mM
+2.6
N.D.
N.D.
N.D.
N.D.
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