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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS09000 and RR42_RS09005 are separated by 111 nucleotides
RR42_RS09005 and RR42_RS09010 are separated by 245 nucleotides
RR42_RS09010 and RR42_RS09015 are separated by 226 nucleotides
RR42_RS09015 and RR42_RS09020 are separated by 73 nucleotides
RR42_RS09000: RR42_RS09000 - hypothetical protein, at 1,890,463 to 1,890,714
_RS09000
RR42_RS09005: RR42_RS09005 - competence protein ComJ, at 1,890,826 to 1,891,683
_RS09005
RR42_RS09010: RR42_RS09010 - FAD-dependent cmnm(5)s(2)U34 oxidoreductase, at 1,891,929 to 1,893,953
_RS09010
RR42_RS09015: RR42_RS09015 - trigger factor, at 1,894,180 to 1,895,541
_RS09015
RR42_RS09020: RR42_RS09020 - Clp protease ClpP, at 1,895,615 to 1,896,265
_RS09020
Group
Condition
RR42
_RS09000
RR42
_RS09005
RR42
_RS09010
RR42
_RS09015
RR42
_RS09020
carbon source
Octanoic (C)
-0.2
-0.0
+0.3
-4.9
N.D.
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.3
-0.1
+0.8
-5.3
N.D.
carbon source
adipate (C)
-0.5
+0.0
-0.2
-3.2
N.D.
carbon source
Suberic (C)
+0.3
-0.1
-0.1
-3.4
N.D.
temperature
R2A 23C
-0.4
-0.4
-0.5
-1.9
N.D.
stress
R2A with Chloride 300 mM
-0.1
-0.1
-0.4
-2.6
N.D.
carbon source
adipate (C)
-0.1
-0.0
-0.2
-2.9
N.D.
nitrogen source
Glucuronamide (N)
-0.2
-0.3
-0.7
-2.0
N.D.
carbon source
Disodium Glutarate (C)
+0.3
+0.2
+0.1
-3.6
N.D.
nitrogen source
casaminos (N)
-0.2
-0.2
-0.5
-1.9
N.D.
nitrogen source
nitrate (N)
-0.0
-0.2
-0.0
-2.5
N.D.
carbon source
Valeric (C)
-0.7
-0.2
-0.3
-1.3
N.D.
carbon source
Pimelic (C)
+0.1
-0.2
-0.3
-2.0
N.D.
carbon source
Dodecandioic (C)
+0.0
-0.2
+0.0
-2.1
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
-0.2
+0.2
+0.1
-2.3
N.D.
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.0
-0.1
+0.1
-2.1
N.D.
carbon source
Disodium Glutarate (C)
+0.2
-0.2
-0.1
-1.9
N.D.
stress
R2A with Cobalt chloride 0.5 mM
-0.0
-0.2
+0.9
-2.5
N.D.
stress
R2A with nitrate 200 mM
+0.0
-0.2
+0.5
-2.1
N.D.
stress
R2A with Sisomicin 0.035 mg/ml
-0.1
+0.3
+0.7
-2.0
N.D.
stress
R2A with copper (II) chloride 0.25 mM
+0.3
+0.1
+0.8
-2.3
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
+0.3
-0.5
+0.6
-1.2
N.D.
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.0
+0.3
+0.6
-1.6
N.D.
carbon source
L-Asparagine (C)
+0.1
+0.0
+0.7
-1.4
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
+0.1
-1.0
+1.6
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
+0.2
-1.0
+1.5
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.4
-0.9
-0.2
+1.8
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
-0.2
+0.2
+1.7
N.D.
stress
R2A with Lomefloxacin 0.001 mM
-0.2
+0.1
+0.5
+2.6
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
+0.1
+0.5
+2.4
N.D.
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