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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS08985 and RR42_RS08990 are separated by 188 nucleotides
RR42_RS08990 and RR42_RS08995 are separated by 240 nucleotides
RR42_RS08995 and RR42_RS09000 are separated by 333 nucleotides
RR42_RS09000 and RR42_RS09005 are separated by 111 nucleotides
RR42_RS08985: RR42_RS08985 - diguanylate cyclase, at 1,886,417 to 1,888,045
_RS08985
RR42_RS08990: RR42_RS08990 - DNA polymerase, at 1,888,234 to 1,889,397
_RS08990
RR42_RS08995: RR42_RS08995 - hypothetical protein, at 1,889,638 to 1,890,129
_RS08995
RR42_RS09000: RR42_RS09000 - hypothetical protein, at 1,890,463 to 1,890,714
_RS09000
RR42_RS09005: RR42_RS09005 - competence protein ComJ, at 1,890,826 to 1,891,683
_RS09005
Group
Condition
RR42
_RS08985
RR42
_RS08990
RR42
_RS08995
RR42
_RS09000
RR42
_RS09005
r2a
R2A
-0.1
-0.3
-0.6
-0.4
-0.3
carbon source
Valeric (C)
-0.1
-0.3
-0.4
-0.7
-0.2
temperature
R2A 23C
-0.2
-0.2
-0.4
-0.4
-0.4
temperature
R2A 23C
-0.4
-0.3
-0.5
-0.1
-0.4
nitrogen source
casaminos (N)
-0.2
-0.3
-0.5
-0.2
-0.2
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.3
-0.2
-0.1
-0.2
-0.5
carbon source
L-Proline (C)
+0.0
-0.2
-0.7
-0.2
-0.2
nitrogen source
L-Serine (N)
-0.3
-0.1
-0.1
-0.3
-0.4
carbon source
L-Alanine (C)
-0.0
-0.3
-0.4
-0.3
-0.2
carbon source
L-Asparagine (C)
-0.2
-0.2
-0.3
-0.0
-0.5
stress
R2A with Bacitracin 0.5 mg/ml
-0.1
-0.1
-0.4
-0.2
-0.2
carbon source
L-Histidine (C)
-0.0
+0.0
-0.9
+0.1
-0.1
carbon source
L-Lactate (C)
-0.1
+0.0
-0.9
+0.1
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.0
+0.1
-0.5
+0.4
-0.9
carbon source
D-Gluconic Acid (C)
+0.1
-0.3
-0.7
+0.2
-0.0
nitrogen source
D-Alanine (N)
+0.0
-0.1
-0.6
+0.1
-0.2
nitrogen source
L-Glutamine (N)
-0.5
-0.2
-0.0
-0.3
+0.3
stress
R2A with Nickel (II) chloride 0.35 mM
-0.2
-0.1
-0.2
+0.3
-0.5
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
+0.2
-0.5
-0.3
+0.1
carbon source
4-Hydroxybenzoic Acid (C)
-0.1
-0.1
-0.7
+0.1
+0.3
carbon source
Suberic (C)
-0.1
+0.2
-0.4
-0.2
+0.1
stress
R2A with Cisplatin 0.001 mg/ml
-0.1
-0.5
+0.2
-0.2
+0.2
carbon source
L-Alanine (C)
-0.0
-0.1
-0.4
+0.6
-0.0
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.0
+0.1
-0.6
+0.3
+0.3
carbon source
Azelaic (C)
+0.1
+0.3
-0.6
+0.3
+0.1
carbon source
succinate (C)
+0.2
+0.3
-0.4
+0.1
+0.2
stress
R2A with Chlorite 4 mM
+0.0
-0.2
+0.2
+0.3
+0.3
stress
R2A with copper (II) chloride 0.25 mM
+0.0
-0.2
+0.7
+0.3
+0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.2
+0.7
+0.4
+0.0
+0.3
stress
R2A with Cobalt chloride 0.3 mM
+0.1
-0.2
+0.9
+0.4
+0.2
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RR42_RS08995
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