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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS08695 and RR42_RS08700 overlap by 4 nucleotides
RR42_RS08700 and RR42_RS08705 are separated by 140 nucleotides
RR42_RS08705 and RR42_RS08710 are separated by 82 nucleotides
RR42_RS08710 and RR42_RS08715 are separated by 141 nucleotides
RR42_RS08695: RR42_RS08695 - hypothetical protein, at 1,821,553 to 1,821,948
_RS08695
RR42_RS08700: RR42_RS08700 - hypothetical protein, at 1,821,945 to 1,822,304
_RS08700
RR42_RS08705: RR42_RS08705 - pirin, at 1,822,445 to 1,823,152
_RS08705
RR42_RS08710: RR42_RS08710 - oxidoreductase, at 1,823,235 to 1,823,999
_RS08710
RR42_RS08715: RR42_RS08715 - LysR family transcriptional regulator, at 1,824,141 to 1,825,058
_RS08715
Group
Condition
RR42
_RS08695
RR42
_RS08700
RR42
_RS08705
RR42
_RS08710
RR42
_RS08715
nitrogen source
L-Tryptophan (N)
-0.1
-1.2
-0.2
-0.2
-0.5
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
-0.7
-0.1
-0.5
-1.0
carbon source
Protocatechuic Acid (C)
-0.2
-0.1
+0.1
-0.2
-1.6
carbon source
Azelaic (C)
-0.4
-0.7
-0.2
+0.1
-0.6
stress
R2A with D-Cycloserine 0.01 mg/ml
+0.1
-0.7
-0.3
-0.1
-0.8
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
-1.6
+0.0
-0.4
+0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.1
-0.8
+0.1
-0.7
-0.1
carbon source
Disodium Glutarate (C)
-0.3
+0.2
-0.0
+0.0
-1.2
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
+0.2
-0.4
-0.3
-0.6
nitrogen source
L-Glutamine (N)
-0.2
-1.0
+0.5
-0.2
-0.1
carbon source
Valeric (C)
+0.2
+0.2
-0.3
-0.4
-0.5
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.1
-0.9
+0.2
+0.2
-0.4
carbon source
succinate (C)
-0.0
-0.5
+0.1
+0.2
-0.7
carbon source
Hexanoic (C)
-0.3
-0.4
+0.3
+0.2
-0.6
stress
R2A with nitrate 200 mM
+0.3
-0.5
-0.2
+0.1
-0.4
stress
R2A with Cisplatin 0.001 mg/ml
-0.3
-0.7
-0.1
-0.5
+1.1
nitrogen source
L-Asparagine (N)
+0.0
+0.2
+0.1
+0.2
-1.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.2
-0.3
-0.6
+0.0
+0.6
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.1
-1.0
-0.2
+0.1
+0.8
carbon source
Pimelic (C)
-0.0
+0.4
+0.4
+0.2
-1.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
+0.7
+0.0
-0.3
-0.6
carbon source
L-Malic (C)
+0.4
-0.5
-0.5
+0.2
+0.6
carbon source
adipate (C)
+0.3
-0.5
+0.1
-0.1
+0.5
carbon source
propionate (C)
-0.2
+0.3
+0.5
+0.1
-0.5
nitrogen source
casaminos (N)
+0.2
-0.4
+0.7
+0.1
+0.2
stress
R2A with Vancomycin 0.5 mg/ml
+0.3
-0.1
+0.1
-0.2
+0.7
stress
R2A with Zinc 0.1 mM
+0.4
-0.3
+0.1
+0.2
+0.6
stress
R2A with Lomefloxacin 0.001 mM
+0.4
+0.5
+0.2
+0.3
-0.4
stress
R2A with Nickel (II) chloride 0.35 mM
+0.0
+0.7
-0.0
+0.3
+0.5
lb
LB
+0.3
+0.9
+0.7
-0.4
+0.1
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