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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS08560 and RR42_RS08565 are separated by 232 nucleotides
RR42_RS08565 and RR42_RS08570 are separated by 12 nucleotides
RR42_RS08570 and RR42_RS08575 are separated by 1 nucleotides
RR42_RS08575 and RR42_RS08580 overlap by 8 nucleotides
RR42_RS08560: RR42_RS08560 - tail sheath protein, at 1,799,327 to 1,800,499
_RS08560
RR42_RS08565: RR42_RS08565 - hypothetical protein, at 1,800,732 to 1,801,331
_RS08565
RR42_RS08570: RR42_RS08570 - hypothetical protein, at 1,801,344 to 1,802,915
_RS08570
RR42_RS08575: RR42_RS08575 - tail protein, at 1,802,917 to 1,803,465
_RS08575
RR42_RS08580: RR42_RS08580 - baseplate assembly protein, at 1,803,458 to 1,804,366
_RS08580
Group
Condition
RR42
_RS08560
RR42
_RS08565
RR42
_RS08570
RR42
_RS08575
RR42
_RS08580
lb
LB
-0.5
N.D.
-0.0
-4.5
+0.7
carbon source
Ethanol (C)
+0.1
N.D.
-0.0
-3.1
-0.1
carbon source
L-Lactate (C)
-0.5
N.D.
-0.1
-1.6
-0.2
nitrogen source
L-Tryptophan (N)
-0.1
N.D.
+0.2
-2.3
-0.0
stress
R2A with Cisplatin 0.001 mg/ml
-0.6
N.D.
+0.1
-1.4
-0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
N.D.
-0.3
-1.6
-0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.1
N.D.
-0.2
-1.7
-0.0
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.3
N.D.
-0.2
-1.6
+0.1
carbon source
L-Histidine (C)
+0.1
N.D.
-0.2
-1.9
+0.0
nitrogen source
L-Threonine (N)
-0.0
N.D.
+0.1
-1.7
-0.2
carbon source
Hexanoic (C)
-0.0
N.D.
-0.1
-1.6
-0.2
carbon source
adipate (C)
-0.0
N.D.
-0.3
-1.1
-0.4
carbon source
4-Hydroxybenzoic Acid (C)
+0.2
N.D.
+0.0
-2.0
-0.0
carbon source
L-Leucine (C)
-0.0
N.D.
+0.1
-1.7
-0.1
carbon source
Valeric (C)
-0.1
N.D.
+0.4
-2.2
+0.2
carbon source
L-Leucine (C)
-0.2
N.D.
-0.2
-1.4
+0.2
stress
R2A with Cobalt chloride 0.5 mM
-0.4
N.D.
-0.3
-1.1
+0.1
carbon source
succinate (C)
-0.1
N.D.
+0.2
-1.3
-0.3
stress
R2A with Chlorite 4 mM
-0.2
N.D.
+0.2
-1.3
-0.1
nitrogen source
L-Lysine (N)
-0.2
N.D.
-0.1
-1.2
+0.2
carbon source
propionate (C)
-0.4
N.D.
+0.3
-1.5
+0.3
nitrogen source
L-Isoleucine (N)
-0.3
N.D.
+0.2
-1.3
+0.1
carbon source
Azelaic (C)
+0.2
N.D.
-0.2
-1.4
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.4
N.D.
-0.3
-1.2
-0.1
carbon source
4-Hydroxybenzoic Acid (C)
-0.5
N.D.
+0.4
-0.9
+0.2
stress
R2A with Chloride 300 mM
-0.1
N.D.
+0.1
-1.2
+0.4
carbon source
Protocatechuic Acid (C)
+0.7
N.D.
+0.2
-1.5
+0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.2
N.D.
+0.3
+1.1
+0.3
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.3
N.D.
+0.0
+1.4
+0.4
stress
R2A with Lomefloxacin 0.001 mM
-0.2
N.D.
+0.2
+1.1
+0.6
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