Private Fitness
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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS08455 and RR42_RS08460 are separated by 555 nucleotides
RR42_RS08460 and RR42_RS08465 are separated by 61 nucleotides
RR42_RS08465 and RR42_RS08470 are separated by 212 nucleotides
RR42_RS08470 and RR42_RS08475 are separated by 20 nucleotides
RR42_RS08455: RR42_RS08455 - hypothetical protein, at 1,782,074 to 1,782,436
_RS08455
RR42_RS08460: RR42_RS08460 - integrase, at 1,782,992 to 1,783,996
_RS08460
RR42_RS08465: RR42_RS08465 - hypothetical protein, at 1,784,058 to 1,784,357
_RS08465
RR42_RS08470: RR42_RS08470 - hypothetical protein, at 1,784,570 to 1,784,776
_RS08470
RR42_RS08475: RR42_RS08475 - hypothetical protein, at 1,784,797 to 1,785,000
_RS08475
Group
Condition
RR42
_RS08455
RR42
_RS08460
RR42
_RS08465
RR42
_RS08470
RR42
_RS08475
stress
R2A with Nickel (II) chloride 0.35 mM
N.D.
-0.7
-0.9
-2.4
N.D.
stress
R2A with copper (II) chloride 0.25 mM
N.D.
-0.1
-1.2
-1.2
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
N.D.
-0.3
-1.4
-0.6
N.D.
carbon source
Dodecandioic (C)
N.D.
+0.2
-0.7
-1.7
N.D.
carbon source
Azelaic (C)
N.D.
-0.1
-0.2
-1.7
N.D.
carbon source
Valeric (C)
N.D.
+0.3
-0.8
-1.2
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
N.D.
-0.1
-1.3
-0.2
N.D.
carbon source
Dodecandioic (C)
N.D.
+0.2
-1.2
-0.7
N.D.
carbon source
Octanoic (C)
N.D.
-0.1
-0.4
-1.0
N.D.
temperature
R2A 37C
N.D.
-0.0
+0.1
-1.5
N.D.
carbon source
succinate (C)
N.D.
-0.2
-0.7
-0.4
N.D.
stress
R2A with Zinc 0.1 mM
N.D.
-0.4
-1.1
+0.2
N.D.
carbon source
Octanoic (C)
N.D.
+0.2
-0.6
-0.7
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
+0.0
-1.2
+0.2
N.D.
carbon source
Carbon source Phenylacetic 2.5 mM
N.D.
+0.3
-0.6
-0.6
N.D.
carbon source
Heptanoic (C)
N.D.
+0.3
-0.6
-0.7
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
-0.0
+0.4
-1.0
N.D.
carbon source
Suberic (C)
N.D.
+0.4
-0.2
-0.8
N.D.
carbon source
succinate (C)
N.D.
+0.4
-0.5
-0.5
N.D.
carbon source
Pimelic (C)
N.D.
+0.5
-0.6
-0.4
N.D.
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
N.D.
+0.4
+0.5
-1.3
N.D.
carbon source
adipate (C)
N.D.
+0.6
-0.8
-0.1
N.D.
nitrogen source
casaminos (N)
N.D.
-0.2
+0.7
-0.8
N.D.
stress
R2A with Cobalt chloride 0.3 mM
N.D.
+0.4
+0.3
-0.7
N.D.
nitrogen source
L-Glutamine (N)
N.D.
-0.8
+0.1
+1.4
N.D.
r2a
R2A
N.D.
+0.3
+0.4
+0.8
N.D.
carbon source
succinate (C)
N.D.
+0.1
+0.5
+0.8
N.D.
nitrogen source
L-Isoleucine (N)
N.D.
+0.3
+0.3
+0.9
N.D.
stress
R2A with Lomefloxacin 0.001 mM
N.D.
+0.1
+0.8
+0.6
N.D.
nitrogen source
L-Isoleucine (N)
N.D.
-0.1
+1.1
+0.6
N.D.
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