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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS08425 and RR42_RS08430 are separated by 427 nucleotides
RR42_RS08430 and RR42_RS08435 are separated by 48 nucleotides
RR42_RS08435 and RR42_RS08440 overlap by 4 nucleotides
RR42_RS08440 and RR42_RS08445 overlap by 11 nucleotides
RR42_RS08425: RR42_RS08425 - hypothetical protein, at 1,778,568 to 1,779,206
_RS08425
RR42_RS08430: RR42_RS08430 - hypothetical protein, at 1,779,634 to 1,780,215
_RS08430
RR42_RS08435: RR42_RS08435 - hypothetical protein, at 1,780,264 to 1,780,749
_RS08435
RR42_RS08440: RR42_RS08440 - ATP synthase I, at 1,780,746 to 1,781,387
_RS08440
RR42_RS08445: RR42_RS08445 - hypothetical protein, at 1,781,377 to 1,781,799
_RS08445
Group
Condition
RR42
_RS08425
RR42
_RS08430
RR42
_RS08435
RR42
_RS08440
RR42
_RS08445
carbon source
Octanoic (C)
-1.7
-0.0
+0.1
-0.6
-0.3
nitrogen source
Glucuronamide (N)
-1.4
-0.0
+0.0
-0.3
-0.3
stress
R2A with Nickel (II) chloride 0.25 mM
-1.6
-0.2
-0.0
-0.2
+0.1
carbon source
Carbon source Phenylacetic 2.5 mM
-1.4
+0.0
+0.3
-0.5
-0.0
carbon source
Valeric (C)
-1.1
-0.2
-0.1
+0.2
-0.2
carbon source
Protocatechuic Acid (C)
-1.0
-0.1
+0.3
-0.7
+0.1
carbon source
butyrate (C)
-1.4
+0.1
-0.1
+0.2
-0.0
nitrogen source
L-Threonine (N)
-1.1
+0.2
-0.2
+0.3
-0.3
stress
R2A with D-Cycloserine 0.01 mg/ml
-1.1
-0.0
+0.1
+0.3
-0.3
stress
R2A with D-Cycloserine 0.5 mg/ml
-1.2
-0.2
+0.6
+0.1
-0.1
carbon source
L-Malic (C)
-0.5
-0.3
+0.2
+0.3
-0.2
nitrogen source
L-Tryptophan (N)
-0.8
+0.1
+0.1
+0.4
-0.2
nitrogen source
nitrate (N)
-0.8
-0.1
+0.3
-0.2
+0.3
stress
R2A with Chlorite 4 mM
-0.6
-0.2
-0.2
+0.6
-0.1
stress
R2A with copper (II) chloride 0.25 mM
-0.8
-0.1
+0.3
+0.2
+0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.7
+0.4
+0.2
+0.4
-0.3
carbon source
Dodecandioic (C)
-0.1
-0.0
+0.4
-0.7
+0.4
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.9
+0.0
-0.2
-0.4
-0.1
carbon source
Valeric (C)
+0.9
+0.1
+0.1
-0.4
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.9
+0.0
-0.1
+0.1
-0.4
stress
R2A with Sisomicin 0.035 mg/ml
+0.9
-0.3
-0.2
+0.1
+0.2
carbon source
D-Lactate (C)
+0.7
-0.3
+0.3
+0.2
-0.1
stress
R2A with Cephalothin 0.25 mg/ml
+0.5
+0.1
+0.1
+0.8
-0.2
lb
LB
+1.0
-0.2
+0.1
+0.7
-0.3
stress
R2A with Cisplatin 0.001 mg/ml
-0.3
+0.3
+0.3
+0.8
+0.3
stress
R2A with nitrate 200 mM
+0.1
+0.2
+0.6
+0.7
+0.4
stress
R2A with Cisplatin 0.001 mg/ml
-0.0
+0.3
+0.5
+0.7
+0.5
stress
R2A with nitrate 150 mM
+0.5
+0.3
+0.3
+0.7
+0.6
stress
R2A with Lomefloxacin 0.00075 mM
+1.7
+1.3
+1.5
+1.6
+1.1
stress
R2A with Lomefloxacin 0.001 mM
+2.3
+2.2
+2.4
+2.9
+1.9
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RR42_RS08435
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