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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS08355 and RR42_RS08360 are separated by 363 nucleotides
RR42_RS08360 and RR42_RS08365 are separated by 438 nucleotides
RR42_RS08365 and RR42_RS08370 are separated by 37 nucleotides
RR42_RS08370 and RR42_RS08375 are separated by 194 nucleotides
RR42_RS08355: RR42_RS08355 - hypothetical protein, at 1,767,392 to 1,768,036
_RS08355
RR42_RS08360: RR42_RS08360 - hypothetical protein, at 1,768,400 to 1,768,948
_RS08360
RR42_RS08365: RR42_RS08365 - hypothetical protein, at 1,769,387 to 1,770,166
_RS08365
RR42_RS08370: RR42_RS08370 - hypothetical protein, at 1,770,204 to 1,771,322
_RS08370
RR42_RS08375: RR42_RS08375 - transposase, at 1,771,517 to 1,771,921
_RS08375
Group
Condition
RR42
_RS08355
RR42
_RS08360
RR42
_RS08365
RR42
_RS08370
RR42
_RS08375
carbon source
4-Hydroxybenzoic Acid (C)
-0.4
-0.4
-1.3
-0.1
N.D.
carbon source
L-Proline (C)
-0.5
+0.0
-1.2
+0.0
N.D.
carbon source
Ethanol (C)
-0.2
-0.3
-1.2
+0.0
N.D.
nitrogen source
nitrate (N)
-0.2
-0.1
-1.4
+0.2
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
-0.4
+0.0
-1.2
+0.2
N.D.
carbon source
Azelaic (C)
-0.2
-0.4
-0.6
-0.2
N.D.
nitrogen source
L-Lysine (N)
+0.3
+0.0
-1.5
+0.0
N.D.
nitrogen source
nitrite (N)
+0.2
-0.2
-1.5
+0.3
N.D.
nitrogen source
Glycine (N)
+0.0
-0.1
-1.3
+0.3
N.D.
nitrogen source
L-Citrulline (N)
+0.1
-0.1
-1.2
+0.2
N.D.
carbon source
succinate (C)
+0.2
-0.2
-1.0
+0.0
N.D.
nitrogen source
L-Valine (N)
-0.3
+0.1
-1.1
+0.3
N.D.
nitrogen source
D-Alanine (N)
+0.1
+0.1
-1.3
+0.3
N.D.
nitrogen source
D-Alanine (N)
+0.1
+0.1
-1.3
+0.3
N.D.
nitrogen source
Glucuronamide (N)
+0.1
+0.1
-1.3
+0.4
N.D.
carbon source
propionate (C)
+0.3
-0.1
-1.0
+0.1
N.D.
nitrogen source
L-Serine (N)
+0.2
-0.1
-1.0
+0.3
N.D.
carbon source
D-Gluconic Acid (C)
+0.2
+0.2
-0.9
+0.1
N.D.
carbon source
a-Ketoglutaric (C)
+0.3
+0.2
-0.9
+0.1
N.D.
nitrogen source
L-Asparagine (N)
+0.1
+0.3
-1.0
+0.2
N.D.
carbon source
L-Alanine (C)
+0.1
+0.5
-0.8
-0.1
N.D.
nitrogen source
L-Valine (N)
+0.3
+0.3
-1.0
+0.1
N.D.
carbon source
Protocatechuic Acid (C)
-0.2
+0.6
-0.4
-0.2
N.D.
carbon source
L-Lactate (C)
+0.3
+0.5
-0.9
+0.1
N.D.
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.0
+1.3
-0.4
-0.1
N.D.
stress
R2A with nitrate 150 mM
+0.3
+0.3
+0.4
+0.4
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
+0.4
+0.6
+0.4
+0.3
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
+0.5
+0.6
+1.1
+0.8
N.D.
stress
R2A with Lomefloxacin 0.00075 mM
+1.8
+1.5
+1.4
+1.5
N.D.
stress
R2A with Lomefloxacin 0.001 mM
+2.8
+2.5
+2.2
+2.6
N.D.
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