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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS08240 and RR42_RS08245 are separated by 134 nucleotides
RR42_RS08245 and RR42_RS08250 are separated by 135 nucleotides
RR42_RS08250 and RR42_RS08255 are separated by 52 nucleotides
RR42_RS08255 and RR42_RS08260 are separated by 3 nucleotides
RR42_RS08240: RR42_RS08240 - DNA-binding protein, at 1,749,030 to 1,750,415
_RS08240
RR42_RS08245: RR42_RS08245 - hypothetical protein, at 1,750,550 to 1,751,347
_RS08245
RR42_RS08250: RR42_RS08250 - coat protein, at 1,751,483 to 1,752,649
_RS08250
RR42_RS08255: RR42_RS08255 - hypothetical protein, at 1,752,702 to 1,753,112
_RS08255
RR42_RS08260: RR42_RS08260 - hypothetical protein, at 1,753,116 to 1,753,511
_RS08260
Group
Condition
RR42
_RS08240
RR42
_RS08245
RR42
_RS08250
RR42
_RS08255
RR42
_RS08260
lb
LB
-0.2
-1.8
-1.5
N.D.
-1.4
stress
R2A with Cobalt chloride 0.3 mM
-0.3
-1.0
-0.2
N.D.
-0.9
carbon source
Azelaic (C)
-0.2
+0.3
+0.4
N.D.
-2.8
carbon source
Protocatechuic Acid (C)
-0.8
+0.6
-0.0
N.D.
-1.9
carbon source
Suberic (C)
-0.6
+0.1
+0.1
N.D.
-1.8
carbon source
adipate (C)
-0.3
-0.5
+0.0
N.D.
-1.2
carbon source
Hexanoic (C)
-1.1
+0.2
+0.0
N.D.
-1.1
carbon source
Dodecandioic (C)
-0.3
-1.0
+0.1
N.D.
-0.8
carbon source
Protocatechuic Acid (C)
+0.1
+0.2
-0.5
N.D.
-1.4
carbon source
Pimelic (C)
-0.5
-0.0
+0.3
N.D.
-1.3
carbon source
L-Lactate (C)
+0.6
-0.8
+0.2
N.D.
-1.2
carbon source
Valeric (C)
-0.6
+0.5
+0.4
N.D.
-1.4
stress
R2A with nitrate 200 mM
-1.1
-0.5
+0.3
N.D.
+0.3
nitrogen source
L-Citrulline (N)
-0.2
-1.3
+0.0
N.D.
+0.6
stress
R2A with Cobalt chloride 0.5 mM
+0.9
-0.0
-0.3
N.D.
-1.5
carbon source
succinate (C)
-0.4
+0.4
+0.4
N.D.
-1.4
carbon source
L-Histidine (C)
+0.2
+0.1
+0.4
N.D.
-1.6
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
+0.3
+0.5
N.D.
-1.4
carbon source
propionate (C)
-0.4
+0.7
+0.3
N.D.
-0.7
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+1.1
-0.6
-0.0
N.D.
-0.5
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.3
+0.8
+0.1
N.D.
-0.9
stress
R2A with Sisomicin 0.035 mg/ml
+0.3
-0.7
-0.1
N.D.
+1.1
nitrogen source
casaminos (N)
+0.5
-0.4
-0.2
N.D.
+1.2
stress
R2A with Cisplatin 0.001 mg/ml
+0.3
-0.7
+1.4
N.D.
+0.0
stress
R2A with Cisplatin 0.001 mg/ml
+0.9
+0.1
+1.4
N.D.
-0.9
stress
R2A with copper (II) chloride 0.25 mM
+0.3
-0.5
+0.3
N.D.
+1.4
carbon source
L-Histidine (C)
+0.5
+0.5
-0.1
N.D.
+1.0
stress
R2A with nitrate 150 mM
-0.2
+0.0
+0.7
N.D.
+1.6
stress
R2A with Lomefloxacin 0.00075 mM
+1.0
+0.4
+2.2
N.D.
+0.8
stress
R2A with Lomefloxacin 0.001 mM
+2.5
+1.6
+2.9
N.D.
+2.2
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RR42_RS08250
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