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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS08200 and RR42_RS08205 overlap by 4 nucleotides
RR42_RS08205 and RR42_RS08210 are separated by 347 nucleotides
RR42_RS08210 and RR42_RS08215 are separated by 101 nucleotides
RR42_RS08215 and RR42_RS08220 are separated by 418 nucleotides
RR42_RS08200: RR42_RS08200 - hypothetical protein, at 1,742,528 to 1,742,743
_RS08200
RR42_RS08205: RR42_RS08205 - hypothetical protein, at 1,742,740 to 1,743,105
_RS08205
RR42_RS08210: RR42_RS08210 - hypothetical protein, at 1,743,453 to 1,743,794
_RS08210
RR42_RS08215: RR42_RS08215 - DNA-binding protein, at 1,743,896 to 1,744,501
_RS08215
RR42_RS08220: RR42_RS08220 - hypothetical protein, at 1,744,920 to 1,745,153
_RS08220
Group
Condition
RR42
_RS08200
RR42
_RS08205
RR42
_RS08210
RR42
_RS08215
RR42
_RS08220
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
N.D.
+1.3
N.D.
-4.7
carbon source
Heptanoic (C)
N.D.
N.D.
-0.5
N.D.
-2.6
stress
R2A with Cobalt chloride 0.3 mM
N.D.
N.D.
-2.3
N.D.
-0.3
carbon source
Disodium Glutarate (C)
N.D.
N.D.
-2.2
N.D.
+0.1
carbon source
Dodecandioic (C)
N.D.
N.D.
-1.5
N.D.
-0.6
carbon source
Hexanoic (C)
N.D.
N.D.
+0.3
N.D.
-2.0
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
N.D.
N.D.
-1.7
N.D.
+0.1
stress
R2A with Chlorite 4 mM
N.D.
N.D.
-2.1
N.D.
+0.9
nitrogen source
D-Alanine (N)
N.D.
N.D.
+0.6
N.D.
-1.3
carbon source
D-Fructose (C)
N.D.
N.D.
-1.3
N.D.
+0.8
nitrogen source
D-Alanine (N)
N.D.
N.D.
-1.2
N.D.
+0.9
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
N.D.
N.D.
-1.1
N.D.
+0.9
carbon source
Hexanoic (C)
N.D.
N.D.
-1.0
N.D.
+0.9
stress
R2A with Bacitracin 0.5 mg/ml
N.D.
N.D.
-1.2
N.D.
+1.2
lb
LB
N.D.
N.D.
+1.6
N.D.
-1.5
nitrogen source
L-Tryptophan (N)
N.D.
N.D.
-1.1
N.D.
+1.3
nitrogen source
L-Valine (N)
N.D.
N.D.
-0.8
N.D.
+1.1
nitrogen source
L-Isoleucine (N)
N.D.
N.D.
+1.3
N.D.
-1.0
nitrogen source
L-Citrulline (N)
N.D.
N.D.
+2.0
N.D.
-1.6
carbon source
Protocatechuic Acid (C)
N.D.
N.D.
-1.5
N.D.
+1.9
nitrogen source
L-Leucine (N)
N.D.
N.D.
+1.8
N.D.
-1.4
nitrogen source
nitrate (N)
N.D.
N.D.
+1.4
N.D.
-0.4
stress
R2A with nitrate 200 mM
N.D.
N.D.
+1.6
N.D.
+0.3
stress
R2A with nitrate 150 mM
N.D.
N.D.
+1.4
N.D.
+0.6
nitrogen source
L-Isoleucine (N)
N.D.
N.D.
+0.5
N.D.
+1.5
stress
R2A with nitrate 200 mM
N.D.
N.D.
+1.5
N.D.
+0.8
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
N.D.
+1.4
N.D.
+1.4
stress
R2A with Cisplatin 0.001 mg/ml
N.D.
N.D.
+3.0
N.D.
+2.4
stress
R2A with Lomefloxacin 0.00075 mM
N.D.
N.D.
+2.7
N.D.
+3.3
stress
R2A with Lomefloxacin 0.001 mM
N.D.
N.D.
+2.6
N.D.
+3.9
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