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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS08135 and RR42_RS08140 are separated by 69 nucleotides
RR42_RS08140 and RR42_RS08145 are separated by 523 nucleotides
RR42_RS08145 and RR42_RS08150 are separated by 833 nucleotides
RR42_RS08150 and RR42_RS08155 are separated by 73 nucleotides
RR42_RS08135: RR42_RS08135 - hypothetical protein, at 1,735,412 to 1,736,032
_RS08135
RR42_RS08140: RR42_RS08140 - hypothetical protein, at 1,736,102 to 1,736,665
_RS08140
RR42_RS08145: RR42_RS08145 - hypothetical protein, at 1,737,189 to 1,737,401
_RS08145
RR42_RS08150: RR42_RS08150 - hypothetical protein, at 1,738,235 to 1,738,459
_RS08150
RR42_RS08155: RR42_RS08155 - hypothetical protein, at 1,738,533 to 1,738,832
_RS08155
Group
Condition
RR42
_RS08135
RR42
_RS08140
RR42
_RS08145
RR42
_RS08150
RR42
_RS08155
carbon source
Hexanoic (C)
-0.6
N.D.
N.D.
N.D.
N.D.
carbon source
Octanoic (C)
-0.5
N.D.
N.D.
N.D.
N.D.
carbon source
L-Histidine (C)
-0.4
N.D.
N.D.
N.D.
N.D.
carbon source
Protocatechuic Acid (C)
-0.4
N.D.
N.D.
N.D.
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.4
N.D.
N.D.
N.D.
N.D.
carbon source
Dodecandioic (C)
-0.4
N.D.
N.D.
N.D.
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
-0.4
N.D.
N.D.
N.D.
N.D.
carbon source
adipate (C)
-0.4
N.D.
N.D.
N.D.
N.D.
carbon source
Heptanoic (C)
-0.4
N.D.
N.D.
N.D.
N.D.
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.4
N.D.
N.D.
N.D.
N.D.
carbon source
L-Glutamine (C)
-0.4
N.D.
N.D.
N.D.
N.D.
carbon source
D,L-Lactate (C)
-0.3
N.D.
N.D.
N.D.
N.D.
carbon source
Valeric (C)
-0.3
N.D.
N.D.
N.D.
N.D.
nitrogen source
L-Glutamine (N)
-0.3
N.D.
N.D.
N.D.
N.D.
carbon source
propionate (C)
-0.3
N.D.
N.D.
N.D.
N.D.
carbon source
adipate (C)
-0.3
N.D.
N.D.
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
-0.3
N.D.
N.D.
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.25 mM
-0.3
N.D.
N.D.
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.3
N.D.
N.D.
N.D.
N.D.
stress
R2A with nitrate 150 mM
+0.3
N.D.
N.D.
N.D.
N.D.
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.3
N.D.
N.D.
N.D.
N.D.
carbon source
L-Threonine (C)
+0.3
N.D.
N.D.
N.D.
N.D.
carbon source
Carbon source D,L-Lactate 10 mM
+0.4
N.D.
N.D.
N.D.
N.D.
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.4
N.D.
N.D.
N.D.
N.D.
stress
R2A with D-Cycloserine 0.01 mg/ml
+0.4
N.D.
N.D.
N.D.
N.D.
stress
R2A with nitrate 200 mM
+0.5
N.D.
N.D.
N.D.
N.D.
lb
LB
+0.6
N.D.
N.D.
N.D.
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
+0.7
N.D.
N.D.
N.D.
N.D.
stress
R2A with Lomefloxacin 0.00075 mM
+1.3
N.D.
N.D.
N.D.
N.D.
stress
R2A with Lomefloxacin 0.001 mM
+2.4
N.D.
N.D.
N.D.
N.D.
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