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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS08025 and RR42_RS08030 are separated by 35 nucleotides
RR42_RS08030 and RR42_RS08035 are separated by 2 nucleotides
RR42_RS08035 and RR42_RS08040 are separated by 113 nucleotides
RR42_RS08040 and RR42_RS08045 are separated by 26 nucleotides
RR42_RS08025: RR42_RS08025 - phage Gp37Gp68, at 1,720,951 to 1,721,838
_RS08025
RR42_RS08030: RR42_RS08030 - hypothetical protein, at 1,721,874 to 1,722,170
_RS08030
RR42_RS08035: RR42_RS08035 - DNA methyltransferase, at 1,722,173 to 1,723,957
_RS08035
RR42_RS08040: RR42_RS08040 - hypothetical protein, at 1,724,071 to 1,724,271
_RS08040
RR42_RS08045: RR42_RS08045 - hypothetical protein, at 1,724,298 to 1,724,849
_RS08045
Group
Condition
RR42
_RS08025
RR42
_RS08030
RR42
_RS08035
RR42
_RS08040
RR42
_RS08045
lb
LB
-4.1
-0.7
+0.0
+0.2
+0.7
stress
R2A with Chloride 300 mM
-1.6
-0.6
-0.8
-0.3
-0.1
stress
R2A with Chloride 300 mM
+0.1
-1.2
-0.6
-0.8
-0.4
carbon source
pyruvate (C)
-0.3
-0.5
-0.7
-0.6
-0.7
carbon source
Carbon source D,L-Lactate 10 mM
-0.5
-1.2
-0.2
-0.1
-0.6
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-1.7
-0.2
+0.3
-0.5
-0.1
carbon source
a-Ketoglutaric (C)
-0.6
-0.2
+0.1
-0.7
-0.7
carbon source
L-Lactate (C)
-1.0
+0.3
-0.6
-0.4
-0.4
nitrogen source
casaminos (N)
-1.4
-0.4
-0.6
+0.4
+0.0
stress
R2A with nitrate 150 mM
+0.6
-0.9
-0.3
-1.1
+0.1
stress
R2A with copper (II) chloride 0.25 mM
-1.0
-1.0
+0.1
+0.6
-0.4
stress
R2A with Cephalothin 0.25 mg/ml
-0.8
+0.6
-0.3
-0.4
-0.5
nitrogen source
Glucuronamide (N)
-1.4
+0.3
-0.3
+0.2
-0.2
carbon source
Heptanoic (C)
-0.3
-0.9
-0.2
-0.4
+0.6
carbon source
adipate (C)
-1.7
-0.5
+0.5
+0.0
+0.5
stress
R2A with Lomefloxacin 0.00075 mM
-1.5
-0.0
+0.4
+0.6
-0.4
nitrogen source
L-Leucine (N)
+0.9
-1.3
-0.5
+0.3
-0.1
r2a
R2A
-0.9
+0.7
-0.6
+0.4
-0.1
carbon source
adipate (C)
+0.5
-1.2
-0.2
-0.2
+0.7
carbon source
Heptanoic (C)
-0.7
+1.0
-0.0
-0.6
+0.3
stress
R2A with Bacitracin 0.5 mg/ml
-0.9
+0.9
-0.3
+0.2
+0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.5
+0.2
+0.3
+0.8
-0.6
carbon source
L-Proline (C)
+1.1
-0.6
-0.7
+0.3
+0.4
carbon source
L-Malic (C)
+0.7
+0.9
-0.4
-0.5
-0.0
carbon source
Disodium Glutarate (C)
-1.0
+0.3
+0.0
+0.3
+1.0
stress
R2A with Vancomycin 0.5 mg/ml
-0.7
-0.5
+1.0
+0.3
+0.6
carbon source
D-Gluconic Acid (C)
+0.4
+1.3
-0.4
-0.5
+0.1
carbon source
Valeric (C)
+0.9
+0.5
-0.7
+0.2
+0.4
carbon source
L-Lactate (C)
+1.1
+0.7
-0.2
+0.3
+0.2
stress
R2A with Lomefloxacin 0.001 mM
-1.9
+0.9
+1.1
+1.2
+0.9
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