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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS07545 and RR42_RS07550 overlap by 4 nucleotides
RR42_RS07550 and RR42_RS07555 are separated by 330 nucleotides
RR42_RS07555 and RR42_RS07560 are separated by 446 nucleotides
RR42_RS07560 and RR42_RS07565 are separated by 158 nucleotides
RR42_RS07545: RR42_RS07545 - branched-chain amino acid ABC transporter substrate-binding protein, at 1,612,714 to 1,613,562
_RS07545
RR42_RS07550: RR42_RS07550 - ABC transporter, at 1,613,559 to 1,614,278
_RS07550
RR42_RS07555: RR42_RS07555 - potassium transporter Kup, at 1,614,609 to 1,616,507
_RS07555
RR42_RS07560: RR42_RS07560 - hypothetical protein, at 1,616,954 to 1,618,537
_RS07560
RR42_RS07565: RR42_RS07565 - transcription accessory protein, at 1,618,696 to 1,621,065
_RS07565
Group
Condition
RR42
_RS07545
RR42
_RS07550
RR42
_RS07555
RR42
_RS07560
RR42
_RS07565
stress
R2A with Bacitracin 0.5 mg/ml
-0.1
-0.2
-4.0
-0.2
-3.0
carbon source
D-Fructose (C)
-0.2
-0.0
-5.0
+0.0
-1.5
carbon source
a-Ketoglutaric (C)
-0.3
-0.4
-4.9
+0.1
-1.1
nitrogen source
Glycine (N)
-0.2
+0.2
-4.7
-0.1
-1.6
carbon source
L-Leucine (C)
-0.1
+0.1
-4.9
+0.0
-1.4
carbon source
4-Hydroxybenzoic Acid (C)
+0.2
-0.0
-4.9
+0.0
-1.6
carbon source
Ethanol (C)
+0.1
+0.1
-4.9
-0.0
-1.6
carbon source
L-Asparagine (C)
-0.3
-0.1
-4.6
+0.0
-1.4
carbon source
adipate (C)
-1.7
-1.0
-3.1
-0.3
-0.1
stress
R2A with nitrate 200 mM
-0.1
+0.0
-4.6
+0.0
-1.4
carbon source
Ethanol (C)
-0.2
+0.0
-4.4
+0.1
-1.5
carbon source
D,L-Lactate (C)
+0.0
+0.1
-4.8
-0.0
-1.3
carbon source
adipate (C)
-1.6
-1.2
-2.9
-0.1
-0.2
carbon source
Pimelic (C)
-1.0
-0.7
-3.6
-0.1
-0.6
carbon source
L-Leucine (C)
-0.0
+0.1
-4.9
+0.0
-1.0
carbon source
pyruvate (C)
+0.2
+0.3
-4.6
-0.0
-1.6
carbon source
L-Phenylalanine (C)
+0.1
-0.1
-4.9
-0.1
-0.6
carbon source
a-Ketoglutaric (C)
-0.3
-0.4
-3.7
+0.1
-1.2
carbon source
4-Hydroxybenzoic Acid (C)
-0.0
+0.1
-4.5
+0.1
-1.2
carbon source
succinate (C)
-0.1
-0.2
-3.8
+0.2
-1.6
stress
R2A with Nickel (II) chloride 0.25 mM
+0.0
-0.1
-5.1
+0.0
-0.3
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
-0.2
-3.5
+0.1
-1.8
carbon source
L-Tryptophan (C)
+0.1
+0.3
-4.8
-0.1
-0.9
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.0
-0.2
-4.4
+0.1
-0.7
nitrogen source
L-Glutamine (N)
+0.2
+0.4
-3.8
-0.2
-1.6
carbon source
L-Threonine (C)
+0.2
+0.2
-4.5
+0.1
-1.1
carbon source
L-Glutamine (C)
+0.2
+0.1
-4.8
-0.1
-0.5
carbon source
L-Alanine (C)
+0.2
+0.1
-3.9
-0.1
-1.1
nitrogen source
L-Asparagine (N)
+0.2
+0.2
-3.4
+0.1
-1.6
stress
R2A with Lomefloxacin 0.001 mM
+0.1
-0.1
+4.8
-0.1
-0.5
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