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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS07530 and RR42_RS07535 are separated by 110 nucleotides
RR42_RS07535 and RR42_RS07540 are separated by 4 nucleotides
RR42_RS07540 and RR42_RS07545 overlap by 4 nucleotides
RR42_RS07545 and RR42_RS07550 overlap by 4 nucleotides
RR42_RS07530: RR42_RS07530 - ABC transporter permease, at 1,609,529 to 1,610,710
_RS07530
RR42_RS07535: RR42_RS07535 - ABC transporter permease, at 1,610,821 to 1,611,687
_RS07535
RR42_RS07540: RR42_RS07540 - ABC transporter permease, at 1,611,692 to 1,612,717
_RS07540
RR42_RS07545: RR42_RS07545 - branched-chain amino acid ABC transporter substrate-binding protein, at 1,612,714 to 1,613,562
_RS07545
RR42_RS07550: RR42_RS07550 - ABC transporter, at 1,613,559 to 1,614,278
_RS07550
Group
Condition
RR42
_RS07530
RR42
_RS07535
RR42
_RS07540
RR42
_RS07545
RR42
_RS07550
carbon source
adipate (C)
-0.4
-1.4
-1.5
-1.7
-1.0
carbon source
adipate (C)
-0.2
-1.0
-1.5
-1.6
-1.2
carbon source
Pimelic (C)
-0.2
-0.7
-1.1
-1.0
-0.5
carbon source
Pimelic (C)
-0.3
-0.8
-0.7
-1.0
-0.7
carbon source
Disodium Glutarate (C)
-0.4
-0.4
-0.5
-0.5
-0.5
carbon source
Protocatechuic Acid (C)
-0.4
-0.5
-0.4
-0.5
-0.0
carbon source
a-Ketoglutaric (C)
-0.2
-0.3
-0.2
-0.3
-0.4
carbon source
Disodium Glutarate (C)
-0.1
-0.4
-0.3
-0.6
-0.0
carbon source
a-Ketoglutaric (C)
-0.2
-0.2
-0.2
-0.3
-0.4
carbon source
Protocatechuic Acid (C)
-0.2
-0.1
-0.3
-0.3
-0.3
carbon source
Suberic (C)
-0.1
-0.2
-0.2
-0.4
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
-0.2
-0.1
-0.7
-0.2
carbon source
L-Asparagine (C)
-0.4
-0.1
-0.1
-0.3
-0.0
carbon source
Suberic (C)
-0.0
-0.2
-0.4
-0.3
+0.1
temperature
R2A 23C
-0.3
-0.2
-0.3
-0.0
+0.2
stress
R2A with sodium fluoride 100 mM
-0.1
+0.1
-0.0
-0.2
-0.3
stress
R2A with Cisplatin 0.001 mg/ml
-0.5
+0.2
+0.1
-0.1
-0.0
nitrogen source
casaminos (N)
+0.2
-0.4
-0.0
-0.2
+0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.3
-0.2
+0.0
+0.2
-0.2
stress
R2A with Nickel (II) chloride 0.35 mM
-0.0
-0.2
+0.3
-0.3
-0.1
nitrogen source
nitrate (N)
-0.1
-0.2
+0.0
-0.3
+0.3
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.0
-0.1
+0.2
-0.3
+0.2
carbon source
Octanoic (C)
-0.3
-0.3
+0.1
+0.2
+0.2
stress
R2A with nitrate 200 mM
+0.4
+0.1
-0.1
-0.2
-0.1
lb
LB
+0.3
+0.2
+0.4
-0.4
+0.0
nitrogen source
L-Leucine (N)
+0.1
-0.1
+0.3
+0.1
+0.2
nitrogen source
L-Glutamine (N)
+0.3
-0.2
-0.1
+0.2
+0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.1
-0.0
+0.3
+0.3
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
-0.1
+0.2
+0.4
-0.0
carbon source
L-Tryptophan (C)
+0.5
-0.0
+0.0
+0.1
+0.3
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