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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS07350 and RR42_RS07355 are separated by 72 nucleotides
RR42_RS07355 and RR42_RS07360 are separated by 134 nucleotides
RR42_RS07360 and RR42_RS07365 are separated by 429 nucleotides
RR42_RS07365 and RR42_RS07370 are separated by 165 nucleotides
RR42_RS07350: RR42_RS07350 - hypothetical protein, at 1,568,081 to 1,568,764
_RS07350
RR42_RS07355: RR42_RS07355 - LuxR family transcriptional regulator, at 1,568,837 to 1,569,469
_RS07355
RR42_RS07360: RR42_RS07360 - ATPase, at 1,569,604 to 1,572,192
_RS07360
RR42_RS07365: RR42_RS07365 - pyruvate dehydrogenase, at 1,572,622 to 1,575,309
_RS07365
RR42_RS07370: RR42_RS07370 - dihydrolipoamide acetyltransferase, at 1,575,475 to 1,577,139
_RS07370
Group
Condition
RR42
_RS07350
RR42
_RS07355
RR42
_RS07360
RR42
_RS07365
RR42
_RS07370
carbon source
Carbon source D,L-Lactate 10 mM
-0.1
N.D.
-2.5
-3.3
N.D.
nitrogen source
nitrite (N)
+0.2
N.D.
-2.1
-3.3
N.D.
carbon source
pyruvate (C)
-0.1
N.D.
-1.9
-3.2
N.D.
carbon source
D,L-Lactate (C)
-0.3
N.D.
-2.5
-2.3
N.D.
nitrogen source
D-Alanine (N)
+0.1
N.D.
-2.1
-3.0
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
N.D.
-1.7
-2.9
N.D.
nitrogen source
nitrate (N)
-0.2
N.D.
-1.2
-3.3
N.D.
nitrogen source
D-Alanine (N)
-0.0
N.D.
-2.4
-2.2
N.D.
nitrogen source
casaminos (N)
-0.6
N.D.
-0.7
-3.2
N.D.
carbon source
D-Gluconic Acid (C)
+0.0
N.D.
-0.7
-3.8
N.D.
carbon source
D-Fructose (C)
+0.0
N.D.
-2.3
-2.1
N.D.
carbon source
D-Lactate (C)
-0.0
N.D.
-1.7
-2.5
N.D.
temperature
R2A 23C
-0.4
N.D.
-1.1
-2.7
N.D.
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.5
N.D.
-0.5
-3.1
N.D.
carbon source
L-Lactate (C)
+0.1
N.D.
-1.4
-2.8
N.D.
carbon source
D,L-Lactate (C)
+0.1
N.D.
-1.0
-3.0
N.D.
stress
R2A with A22 0.01 mg/ml
-0.4
N.D.
-0.8
-2.8
N.D.
carbon source
L-Lactate (C)
+0.1
N.D.
-1.3
-2.7
N.D.
carbon source
L-Malic (C)
+0.0
N.D.
-0.5
-3.4
N.D.
carbon source
Disodium Glutarate (C)
+0.4
N.D.
-1.0
-3.2
N.D.
carbon source
D,L-Lactate (C)
+0.4
N.D.
-0.8
-3.3
N.D.
carbon source
succinate (C)
+0.1
N.D.
-1.2
-2.5
N.D.
nitrogen source
L-Glutamine (N)
+0.4
N.D.
-1.0
-2.9
N.D.
carbon source
succinate (C)
+0.2
N.D.
-1.0
-2.5
N.D.
carbon source
propionate (C)
+0.0
N.D.
+0.3
-3.5
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
N.D.
+1.9
-1.8
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
-0.5
N.D.
+3.0
+1.3
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
+0.3
N.D.
+2.4
+1.4
N.D.
stress
R2A with Nickel (II) chloride 0.5 mM
+0.4
N.D.
+2.3
+1.7
N.D.
stress
R2A with Lomefloxacin 0.001 mM
-0.2
N.D.
+2.1
+3.1
N.D.
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