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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS07320 and RR42_RS07325 are separated by 97 nucleotides
RR42_RS07325 and RR42_RS07330 are separated by 180 nucleotides
RR42_RS07330 and RR42_RS07335 are separated by 277 nucleotides
RR42_RS07335 and RR42_RS07340 are separated by 34 nucleotides
RR42_RS07320: RR42_RS07320 - MarR family transcriptional regulator, at 1,561,107 to 1,561,556
_RS07320
RR42_RS07325: RR42_RS07325 - exodeoxyribonuclease III, at 1,561,654 to 1,562,451
_RS07325
RR42_RS07330: RR42_RS07330 - histidine utilization repressor, at 1,562,632 to 1,563,345
_RS07330
RR42_RS07335: RR42_RS07335 - MFS transporter, at 1,563,623 to 1,564,843
_RS07335
RR42_RS07340: RR42_RS07340 - oligopeptidase A, at 1,564,878 to 1,566,992
_RS07340
Group
Condition
RR42
_RS07320
RR42
_RS07325
RR42
_RS07330
RR42
_RS07335
RR42
_RS07340
lb
LB
N.D.
-5.6
-1.1
+0.3
+0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
-4.2
-0.2
-0.4
-0.6
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
-4.4
-0.2
+0.1
-0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
N.D.
-3.7
-1.5
-0.0
+0.6
carbon source
Protocatechuic Acid (C)
N.D.
-1.0
-1.4
-0.4
-0.8
carbon source
Protocatechuic Acid (C)
N.D.
-1.2
-2.2
+0.1
-0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
-2.0
-1.1
+0.0
-0.4
stress
R2A with D-Cycloserine 0.5 mg/ml
N.D.
-2.1
-1.2
+0.0
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
N.D.
-2.7
-1.0
+0.0
+0.5
carbon source
Carbon source Phenylacetic 2.5 mM
N.D.
-2.3
-0.4
+0.1
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
N.D.
-2.1
-0.9
+0.1
+0.3
carbon source
Octanoic (C)
N.D.
-0.2
-2.3
-0.0
-0.0
carbon source
Carbon source Phenylacetic 2.5 mM
N.D.
-2.1
-0.2
+0.1
-0.1
carbon source
Octanoic (C)
N.D.
-0.2
-1.8
-0.0
-0.1
stress
R2A with Lomefloxacin 0.001 mM
N.D.
-0.5
-1.0
-0.4
-0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
-1.7
-0.0
-0.1
-0.4
nitrogen source
L-Serine (N)
N.D.
-0.4
-1.3
-0.2
-0.3
stress
R2A with Lomefloxacin 0.00075 mM
N.D.
-1.0
-0.4
-0.3
-0.3
nitrogen source
L-Lysine (N)
N.D.
-0.9
-0.6
-0.3
-0.2
carbon source
L-Histidine (C)
N.D.
-2.8
+1.5
-0.7
+0.2
carbon source
L-Histidine (C)
N.D.
-2.9
+1.3
-0.5
+0.4
carbon source
Carbon source D,L-Lactate 10 mM
N.D.
-0.9
-0.3
-0.2
-0.3
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
-0.6
-0.8
-0.0
-0.0
nitrogen source
L-Serine (N)
N.D.
-0.3
-1.0
-0.2
-0.0
nitrogen source
nitrite (N)
N.D.
-0.7
-0.9
-0.1
+0.2
stress
R2A with Cobalt chloride 0.5 mM
N.D.
-0.6
-0.9
-0.0
+0.3
carbon source
Suberic (C)
N.D.
+0.1
-1.1
+0.2
+0.2
carbon source
propionate (C)
N.D.
-0.5
+1.0
+0.1
-0.1
stress
R2A with Nickel (II) chloride 0.35 mM
N.D.
-0.3
+0.6
+0.3
+0.8
stress
R2A with Nickel (II) chloride 0.5 mM
N.D.
+0.0
+0.1
+0.3
+1.2
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