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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS07255 and RR42_RS07260 are separated by 97 nucleotides
RR42_RS07260 and RR42_RS07265 are separated by 207 nucleotides
RR42_RS07265 and RR42_RS07270 are separated by 164 nucleotides
RR42_RS07270 and RR42_RS07275 are separated by 347 nucleotides
RR42_RS07255: RR42_RS07255 - hypothetical protein, at 1,544,860 to 1,545,111
_RS07255
RR42_RS07260: RR42_RS07260 - hypothetical protein, at 1,545,209 to 1,545,577
_RS07260
RR42_RS07265: RR42_RS07265 - hypothetical protein, at 1,545,785 to 1,546,039
_RS07265
RR42_RS07270: RR42_RS07270 - NAD-glutamate dehydrogenase, at 1,546,204 to 1,551,084
_RS07270
RR42_RS07275: RR42_RS07275 - acetyl-CoA hydrolase, at 1,551,432 to 1,552,946
_RS07275
Group
Condition
RR42
_RS07255
RR42
_RS07260
RR42
_RS07265
RR42
_RS07270
RR42
_RS07275
stress
R2A with Lomefloxacin 0.001 mM
-0.6
-0.3
-0.7
-0.2
-0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-1.6
+0.3
+0.1
-0.0
-0.3
stress
R2A with Cobalt chloride 0.3 mM
-1.3
+0.0
-0.2
-0.1
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-1.2
+0.2
-0.5
-0.0
+0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.5
-0.6
-1.1
-0.0
-0.1
stress
R2A with Nickel (II) chloride 0.25 mM
-1.1
-0.1
+0.4
-0.2
-0.1
stress
R2A with Cephalothin 0.25 mg/ml
-0.6
+0.4
-0.6
-0.0
-0.0
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.8
-0.4
-0.6
-0.2
-0.4
r2a
R2A
+0.4
+0.2
-0.8
-0.2
-0.2
stress
R2A with Cisplatin 0.001 mg/ml
-0.9
-0.2
+0.6
-0.1
+0.0
nitrogen source
nitrite (N)
-0.8
-0.2
+0.5
-0.1
-0.0
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.7
-0.3
+0.6
-0.0
-0.1
carbon source
Protocatechuic Acid (C)
+0.4
-0.9
+0.1
+0.1
-0.2
nitrogen source
L-Tryptophan (N)
-1.0
+0.1
+0.5
+0.0
-0.1
stress
R2A with Lomefloxacin 0.00075 mM
-0.7
+0.1
+0.6
-0.2
-0.2
carbon source
adipate (C)
+0.8
-0.4
-0.4
+0.2
-0.4
carbon source
D,L-Lactate (C)
+0.5
+0.4
-0.6
+0.1
-0.2
nitrogen source
L-Glutamine (N)
-0.8
+0.0
+0.8
+0.1
+0.0
carbon source
Disodium Glutarate (C)
+1.0
-0.2
-0.6
-0.0
+0.2
lb
LB
-0.6
+0.4
+0.8
+0.2
-0.3
stress
R2A with Nickel (II) chloride 0.5 mM
+0.9
-0.3
-0.4
-0.1
+0.2
nitrogen source
D-Alanine (N)
-0.4
-0.1
+1.0
-0.0
-0.1
carbon source
Trisodium citrate (C)
+0.9
-0.3
+0.3
-0.1
+0.1
carbon source
Valeric (C)
+0.8
+0.5
+0.1
-0.0
-0.2
nitrogen source
L-Leucine (N)
-0.1
+0.3
+0.8
+0.1
+0.2
carbon source
Protocatechuic Acid (C)
+1.2
-0.3
+0.2
+0.2
+0.1
carbon source
Octanoic (C)
+1.0
+0.2
+0.3
+0.1
-0.1
carbon source
Octanoic (C)
+1.1
+0.2
+0.3
-0.0
-0.2
carbon source
Pimelic (C)
+1.5
-0.1
+0.5
-0.0
+0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.3
+1.0
+1.6
+0.1
+0.1
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RR42_RS07265
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