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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS06510 and RR42_RS06515 are separated by 55 nucleotides
RR42_RS06515 and RR42_RS06520 are separated by 344 nucleotides
RR42_RS06520 and RR42_RS06525 are separated by 367 nucleotides
RR42_RS06525 and RR42_RS06530 overlap by 4 nucleotides
RR42_RS06510: RR42_RS06510 - hypothetical protein, at 1,424,741 to 1,425,202
_RS06510
RR42_RS06515: RR42_RS06515 - electron transfer flavoprotein-ubiquinone oxidoreductase, at 1,425,258 to 1,426,943
_RS06515
RR42_RS06520: RR42_RS06520 - short-chain dehydrogenase, at 1,427,288 to 1,428,073
_RS06520
RR42_RS06525: RR42_RS06525 - C4-dicarboxylate ABC transporter permease, at 1,428,441 to 1,429,049
_RS06525
RR42_RS06530: RR42_RS06530 - C4-dicarboxylate ABC transporter, at 1,429,046 to 1,430,350
_RS06530
Group
Condition
RR42
_RS06510
RR42
_RS06515
RR42
_RS06520
RR42
_RS06525
RR42
_RS06530
stress
R2A with Nickel (II) chloride 0.35 mM
-0.2
N.D.
-0.9
-0.4
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.6
N.D.
-0.4
-0.2
-0.1
stress
R2A with Cisplatin 0.001 mg/ml
+0.1
N.D.
-0.3
-0.5
-0.4
carbon source
L-Tryptophan (C)
-0.5
N.D.
+0.1
-0.4
-0.1
carbon source
L-Alanine (C)
-0.7
N.D.
+0.2
-0.3
-0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.1
N.D.
-0.1
-0.9
+0.0
carbon source
D-Lactate (C)
-0.4
N.D.
+0.3
-0.5
-0.1
carbon source
D-Gluconic Acid (C)
-0.5
N.D.
+0.3
-0.5
-0.1
carbon source
butyrate (C)
-0.2
N.D.
+0.2
-0.6
-0.2
nitrogen source
L-Glutamine (N)
+0.2
N.D.
-0.4
-0.4
+0.3
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.8
N.D.
-0.3
-0.4
-0.3
temperature
R2A 37C
-0.1
N.D.
+0.5
-0.5
+0.1
carbon source
Azelaic (C)
+0.7
N.D.
-0.1
-0.5
-0.2
carbon source
propionate (C)
+0.6
N.D.
-0.4
-0.2
-0.1
carbon source
L-Histidine (C)
+0.5
N.D.
-0.2
-0.3
-0.0
carbon source
L-Phenylalanine (C)
+0.3
N.D.
+0.3
-0.3
-0.3
stress
R2A with Chlorite 4 mM
+0.6
N.D.
-0.4
-0.2
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.8
N.D.
-0.6
+0.0
-0.0
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.9
N.D.
-0.0
-0.5
-0.1
stress
R2A with Cobalt chloride 0.5 mM
+0.6
N.D.
-0.3
-0.2
+0.2
nitrogen source
L-Lysine (N)
+0.7
N.D.
-0.1
-0.3
+0.0
stress
R2A with Cisplatin 0.001 mg/ml
+0.6
N.D.
-0.1
+0.2
-0.3
carbon source
adipate (C)
+0.8
N.D.
+0.1
-0.3
-0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.6
N.D.
+0.4
-0.3
+0.0
carbon source
Pimelic (C)
+0.7
N.D.
+0.2
-0.2
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
+0.9
N.D.
+0.1
+0.0
-0.3
nitrogen source
Glucuronamide (N)
-0.1
N.D.
+0.5
+0.3
+0.3
nitrogen source
L-Isoleucine (N)
+0.6
N.D.
+0.3
+0.1
-0.1
carbon source
Protocatechuic Acid (C)
+1.1
N.D.
-0.3
+0.3
-0.2
r2a
R2A
+0.6
N.D.
+0.0
+0.3
+0.3
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