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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS06425 and RR42_RS06430 are separated by 85 nucleotides
RR42_RS06430 and RR42_RS06435 are separated by 21 nucleotides
RR42_RS06435 and RR42_RS06440 are separated by 86 nucleotides
RR42_RS06440 and RR42_RS06445 are separated by 71 nucleotides
RR42_RS06425: RR42_RS06425 - anhydrase, at 1,407,671 to 1,408,213
_RS06425
RR42_RS06430: RR42_RS06430 - hypothetical protein, at 1,408,299 to 1,408,529
_RS06430
RR42_RS06435: RR42_RS06435 - 2-hydroxyacid dehydrogenase, at 1,408,551 to 1,409,972
_RS06435
RR42_RS06440: RR42_RS06440 - membrane protein, at 1,410,059 to 1,410,433
_RS06440
RR42_RS06445: RR42_RS06445 - NAD(P)H-quinone oxidoreductase, at 1,410,505 to 1,411,110
_RS06445
Group
Condition
RR42
_RS06425
RR42
_RS06430
RR42
_RS06435
RR42
_RS06440
RR42
_RS06445
nitrogen source
L-Glutamine (N)
+0.3
-2.1
+0.1
+0.3
-0.8
nitrogen source
nitrite (N)
-0.1
-0.3
-0.5
-0.3
-0.5
nitrogen source
L-Tryptophan (N)
-0.2
-1.2
-0.1
+0.1
-0.2
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.3
-1.1
+0.6
-0.5
+0.2
carbon source
a-Ketoglutaric (C)
+0.1
-0.9
-0.6
-0.2
+0.6
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.4
-0.5
+0.5
-0.4
-0.1
nitrogen source
L-Threonine (N)
-0.1
-0.8
-0.3
+0.1
+0.5
carbon source
adipate (C)
+0.2
-0.4
+0.0
+0.4
-0.7
carbon source
L-Asparagine (C)
-0.2
+0.5
+0.2
-0.5
-0.4
carbon source
Heptanoic (C)
+0.2
+0.3
+0.3
-0.5
-0.5
carbon source
D-Lactate (C)
+0.1
-0.6
-0.1
-0.3
+0.6
stress
R2A with Cisplatin 0.001 mg/ml
+0.1
-0.4
+0.7
+0.1
-0.4
carbon source
Valeric (C)
+0.0
+0.6
+0.5
-0.0
-0.8
carbon source
Azelaic (C)
-0.1
-0.6
+0.4
+0.3
+0.4
stress
R2A with Lomefloxacin 0.001 mM
-0.0
-0.3
-0.2
+0.6
+0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.1
-0.4
-0.2
+0.0
+1.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.4
+0.3
-0.6
+0.1
+0.5
carbon source
butyrate (C)
-0.1
-0.3
+0.1
+0.3
+0.9
carbon source
Dodecandioic (C)
+0.1
+1.1
-0.3
-0.3
+0.3
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.2
-0.2
+0.8
+0.2
+0.4
carbon source
L-Lactate (C)
+0.2
+0.9
+0.4
-0.4
-0.0
stress
R2A with Vancomycin 0.5 mg/ml
+0.1
+0.8
-0.4
+0.1
+0.5
carbon source
D,L-Lactate (C)
+0.1
+0.8
+0.5
+0.1
-0.3
nitrogen source
L-Isoleucine (N)
-0.2
+0.2
+0.0
+0.1
+1.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
+1.0
-0.3
+0.1
+0.5
stress
R2A with Nickel (II) chloride 0.5 mM
+0.4
-0.6
+1.0
+0.5
+0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.4
+1.2
-0.1
+0.2
+0.1
lb
LB
-0.2
+0.5
+0.5
+0.1
+1.0
stress
R2A with Nickel (II) chloride 0.35 mM
+0.2
+0.6
+0.9
-0.2
+0.7
stress
R2A with Lomefloxacin 0.00075 mM
+0.4
+1.0
+0.3
+0.4
-0.0
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