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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS06410 and RR42_RS06415 are separated by 2 nucleotides
RR42_RS06415 and RR42_RS06420 are separated by 341 nucleotides
RR42_RS06420 and RR42_RS06425 are separated by 305 nucleotides
RR42_RS06425 and RR42_RS06430 are separated by 85 nucleotides
RR42_RS06410: RR42_RS06410 - monooxygenase, at 1,404,659 to 1,405,882
_RS06410
RR42_RS06415: RR42_RS06415 - glyoxalase, at 1,405,885 to 1,406,373
_RS06415
RR42_RS06420: RR42_RS06420 - DSBA oxidoreductase, at 1,406,715 to 1,407,365
_RS06420
RR42_RS06425: RR42_RS06425 - anhydrase, at 1,407,671 to 1,408,213
_RS06425
RR42_RS06430: RR42_RS06430 - hypothetical protein, at 1,408,299 to 1,408,529
_RS06430
Group
Condition
RR42
_RS06410
RR42
_RS06415
RR42
_RS06420
RR42
_RS06425
RR42
_RS06430
stress
R2A with Lomefloxacin 0.001 mM
-0.8
-1.6
-0.6
-0.0
-0.3
nitrogen source
L-Tryptophan (N)
+0.0
-0.6
-0.2
-0.2
-1.2
nitrogen source
L-Glutamine (N)
+0.2
+0.0
-0.0
+0.3
-2.1
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.2
+0.5
-0.1
-0.3
-1.1
nitrogen source
L-Serine (N)
+0.1
-0.5
+0.1
-0.3
-0.6
carbon source
Protocatechuic Acid (C)
-0.1
+0.1
-1.0
-0.3
+0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.0
-0.3
+0.2
-0.2
-0.7
carbon source
Carbon source D,L-Lactate 10 mM
+0.1
-1.0
+0.2
+0.2
-0.5
carbon source
Disodium Glutarate (C)
-0.0
-0.9
+0.1
-0.3
+0.2
carbon source
a-Ketoglutaric (C)
-0.3
+0.4
-0.1
-0.1
-0.7
stress
R2A with Nickel (II) chloride 0.25 mM
+0.2
+0.4
-0.5
+0.0
-0.7
carbon source
a-Ketoglutaric (C)
-0.1
+0.3
+0.2
+0.1
-0.9
stress
R2A with Nickel (II) chloride 0.35 mM
-0.0
-0.9
-0.3
+0.2
+0.6
stress
R2A with Nickel (II) chloride 0.5 mM
-0.1
+0.2
-0.4
+0.4
-0.6
carbon source
Hexanoic (C)
+0.0
-0.6
-0.5
-0.1
+0.8
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.1
-0.5
-0.3
+0.2
+0.9
stress
R2A with Cisplatin 0.001 mg/ml
-0.2
+1.3
-0.5
+0.1
-0.4
carbon source
L-Asparagine (C)
-0.2
+0.4
-0.3
-0.2
+0.5
carbon source
adipate (C)
-0.1
+0.9
-0.2
+0.2
-0.4
carbon source
Suberic (C)
+0.2
+0.4
-0.7
+0.1
+0.3
lb
LB
+0.1
-0.4
+0.6
-0.2
+0.5
carbon source
L-Lactate (C)
-0.2
-0.2
-0.2
+0.2
+0.9
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.3
-0.5
+0.0
+0.4
+0.3
carbon source
Dodecandioic (C)
-0.0
-0.3
-0.1
+0.3
+0.8
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.3
+0.1
-0.2
+0.2
+1.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
-0.5
-0.1
+0.4
+1.2
carbon source
Disodium Glutarate (C)
+0.1
+0.6
-0.1
-0.2
+0.5
carbon source
Dodecandioic (C)
+0.0
+0.0
-0.3
+0.1
+1.1
stress
R2A with Lomefloxacin 0.00075 mM
-0.0
-0.4
+0.1
+0.4
+1.0
carbon source
L-Glutamine (C)
-0.3
+0.5
+0.1
+0.0
+0.8
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