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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS06355 and RR42_RS06360 are separated by 114 nucleotides
RR42_RS06360 and RR42_RS06365 are separated by 97 nucleotides
RR42_RS06365 and RR42_RS06370 are separated by 194 nucleotides
RR42_RS06370 and RR42_RS06375 are separated by 150 nucleotides
RR42_RS06355: RR42_RS06355 - Fe-S cluster assembly protein HesB, at 1,393,641 to 1,394,567
_RS06355
RR42_RS06360: RR42_RS06360 - acetyl-CoA carboxylase subunit alpha, at 1,394,682 to 1,395,653
_RS06360
RR42_RS06365: RR42_RS06365 - tRNA(Ile)-lysidine synthetase, at 1,395,751 to 1,397,031
_RS06365
RR42_RS06370: RR42_RS06370 - aspartate kinase, at 1,397,226 to 1,398,476
_RS06370
RR42_RS06375: RR42_RS06375 - tRNA-Ser, at 1,398,627 to 1,398,720
_RS06375
Group
Condition
RR42
_RS06355
RR42
_RS06360
RR42
_RS06365
RR42
_RS06370
RR42
_RS06375
stress
R2A with Cisplatin 0.001 mg/ml
-3.6
N.D.
N.D.
N.D.
N.D.
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-1.8
N.D.
N.D.
N.D.
N.D.
stress
R2A with Dimethyl Sulfoxide 5 vol%
-1.6
N.D.
N.D.
N.D.
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-1.4
N.D.
N.D.
N.D.
N.D.
stress
R2A with copper (II) chloride 0.25 mM
-1.3
N.D.
N.D.
N.D.
N.D.
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-1.2
N.D.
N.D.
N.D.
N.D.
stress
R2A with A22 0.01 mg/ml
-1.1
N.D.
N.D.
N.D.
N.D.
carbon source
D,L-Lactate (C)
-0.9
N.D.
N.D.
N.D.
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
-0.9
N.D.
N.D.
N.D.
N.D.
carbon source
L-Asparagine (C)
-0.9
N.D.
N.D.
N.D.
N.D.
stress
R2A with Chloride 300 mM
-0.9
N.D.
N.D.
N.D.
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
-0.9
N.D.
N.D.
N.D.
N.D.
temperature
R2A 37C
-0.8
N.D.
N.D.
N.D.
N.D.
temperature
R2A 23C
-0.8
N.D.
N.D.
N.D.
N.D.
carbon source
L-Threonine (C)
-0.8
N.D.
N.D.
N.D.
N.D.
carbon source
L-Malic (C)
-0.8
N.D.
N.D.
N.D.
N.D.
carbon source
Disodium Glutarate (C)
-0.8
N.D.
N.D.
N.D.
N.D.
nitrogen source
L-Glutamine (N)
-0.8
N.D.
N.D.
N.D.
N.D.
nitrogen source
nitrate (N)
-0.7
N.D.
N.D.
N.D.
N.D.
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.7
N.D.
N.D.
N.D.
N.D.
stress
R2A with nitrate 200 mM
-0.7
N.D.
N.D.
N.D.
N.D.
carbon source
Protocatechuic Acid (C)
+0.8
N.D.
N.D.
N.D.
N.D.
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.9
N.D.
N.D.
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+1.0
N.D.
N.D.
N.D.
N.D.
lb
LB
+1.1
N.D.
N.D.
N.D.
N.D.
carbon source
Protocatechuic Acid (C)
+1.1
N.D.
N.D.
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+1.3
N.D.
N.D.
N.D.
N.D.
stress
R2A with Cobalt chloride 0.5 mM
+1.5
N.D.
N.D.
N.D.
N.D.
stress
R2A with Cobalt chloride 0.3 mM
+1.5
N.D.
N.D.
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+1.8
N.D.
N.D.
N.D.
N.D.
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