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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS06300 and RR42_RS06305 are separated by 155 nucleotides
RR42_RS06305 and RR42_RS06310 are separated by 154 nucleotides
RR42_RS06310 and RR42_RS06315 are separated by 137 nucleotides
RR42_RS06315 and RR42_RS06320 are separated by 25 nucleotides
RR42_RS06300: RR42_RS06300 - DNA-binding protein, at 1,383,264 to 1,384,739
_RS06300
RR42_RS06305: RR42_RS06305 - hypothetical protein, at 1,384,895 to 1,385,530
_RS06305
RR42_RS06310: RR42_RS06310 - inositol monophosphatase, at 1,385,685 to 1,386,506
_RS06310
RR42_RS06315: RR42_RS06315 - RNA methyltransferase, at 1,386,644 to 1,387,645
_RS06315
RR42_RS06320: RR42_RS06320 - 3-methylitaconate isomerase, at 1,387,671 to 1,388,177
_RS06320
Group
Condition
RR42
_RS06300
RR42
_RS06305
RR42
_RS06310
RR42
_RS06315
RR42
_RS06320
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
+0.3
N.D.
-1.2
N.D.
stress
R2A with Lomefloxacin 0.001 mM
-0.3
+0.2
N.D.
-0.9
N.D.
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.2
+0.1
N.D.
-0.8
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.6
+0.1
N.D.
-0.2
N.D.
carbon source
adipate (C)
-0.5
-0.2
N.D.
+0.2
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.7
-0.4
N.D.
+0.7
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.4
-0.2
N.D.
+0.3
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.7
+0.1
N.D.
+0.3
N.D.
carbon source
L-Lactate (C)
-0.3
-0.2
N.D.
+0.3
N.D.
stress
R2A with D-Cycloserine 0.01 mg/ml
+0.2
+0.1
N.D.
-0.4
N.D.
r2a
R2A
+0.4
-0.1
N.D.
-0.3
N.D.
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.2
-0.2
N.D.
+0.5
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.5
+0.2
N.D.
+0.4
N.D.
carbon source
L-Asparagine (C)
-0.3
+0.2
N.D.
+0.3
N.D.
lb
LB
+0.0
-0.5
N.D.
+0.7
N.D.
carbon source
succinate (C)
-0.3
+0.0
N.D.
+0.5
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
-0.2
N.D.
+0.8
N.D.
carbon source
Protocatechuic Acid (C)
-0.3
+0.2
N.D.
+0.7
N.D.
nitrogen source
L-Leucine (N)
-0.1
+0.2
N.D.
+0.4
N.D.
carbon source
Carbon source Phenylacetic 2.5 mM
+0.2
-0.1
N.D.
+0.5
N.D.
stress
R2A with copper (II) chloride 0.25 mM
-0.2
+0.2
N.D.
+0.6
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
+0.2
-0.3
N.D.
+0.7
N.D.
carbon source
Disodium Glutarate (C)
+0.3
+0.2
N.D.
+0.4
N.D.
carbon source
Azelaic (C)
+0.1
+0.3
N.D.
+0.4
N.D.
stress
R2A with Sisomicin 0.035 mg/ml
+0.3
+0.3
N.D.
+0.2
N.D.
stress
R2A with A22 0.01 mg/ml
+0.0
+0.1
N.D.
+0.7
N.D.
stress
R2A with nitrate 200 mM
+0.1
+0.3
N.D.
+0.5
N.D.
carbon source
Carbon source Phenylacetic 2.5 mM
+0.3
+0.1
N.D.
+0.6
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
+0.1
-0.0
N.D.
+0.9
N.D.
carbon source
Disodium Glutarate (C)
+0.3
+0.2
N.D.
+0.8
N.D.
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