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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS06265 and RR42_RS06270 are separated by 185 nucleotides
RR42_RS06270 and RR42_RS06275 are separated by 92 nucleotides
RR42_RS06275 and RR42_RS06280 are separated by 95 nucleotides
RR42_RS06280 and RR42_RS06285 overlap by 4 nucleotides
RR42_RS06265: RR42_RS06265 - hypothetical protein, at 1,374,224 to 1,374,448
_RS06265
RR42_RS06270: RR42_RS06270 - cupin, at 1,374,634 to 1,375,761
_RS06270
RR42_RS06275: RR42_RS06275 - peptidylprolyl isomerase, at 1,375,854 to 1,376,387
_RS06275
RR42_RS06280: RR42_RS06280 - membrane protein, at 1,376,483 to 1,377,541
_RS06280
RR42_RS06285: RR42_RS06285 - DNA mismatch repair protein MutS, at 1,377,538 to 1,380,180
_RS06285
Group
Condition
RR42
_RS06265
RR42
_RS06270
RR42
_RS06275
RR42
_RS06280
RR42
_RS06285
stress
R2A with Vancomycin 0.5 mg/ml
N.D.
-2.0
-0.8
-0.9
-0.3
stress
R2A with nitrate 150 mM
N.D.
-1.6
-0.5
-0.5
-0.1
stress
R2A with Cobalt chloride 0.3 mM
N.D.
-1.0
-0.8
-0.4
-0.4
stress
R2A with Nickel (II) chloride 0.35 mM
N.D.
-0.9
-0.4
-1.0
-0.2
stress
R2A with Zinc 0.1 mM
N.D.
-1.2
-0.5
-0.2
-0.4
stress
R2A with Nickel (II) chloride 0.5 mM
N.D.
-1.7
-0.0
-0.2
-0.2
temperature
R2A 37C
N.D.
-0.5
-0.4
-0.8
-0.4
carbon source
Protocatechuic Acid (C)
N.D.
-1.4
-0.7
+0.1
+0.0
stress
R2A with Bacitracin 0.5 mg/ml
N.D.
-1.3
-0.3
-0.2
-0.1
stress
R2A with Nickel (II) chloride 0.35 mM
N.D.
-0.8
-0.3
-0.4
-0.3
stress
R2A with Chloride 300 mM
N.D.
-1.3
-0.6
-0.0
+0.0
carbon source
Valeric (C)
N.D.
-0.3
-1.0
-0.5
-0.1
stress
R2A with Chlorite 4 mM
N.D.
-2.0
-0.0
+0.2
+0.2
stress
R2A with copper (II) chloride 0.25 mM
N.D.
-1.7
-0.5
+0.5
+0.1
stress
R2A with Chloride 300 mM
N.D.
-1.3
-0.3
-0.0
+0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
N.D.
-0.0
-1.1
-0.4
+0.3
stress
R2A with Cobalt chloride 0.5 mM
N.D.
-1.4
-0.1
+0.4
-0.0
lb
LB
N.D.
-1.6
-0.0
+0.5
+0.1
carbon source
Dodecandioic (C)
N.D.
-0.9
-0.3
+0.3
-0.0
carbon source
Octanoic (C)
N.D.
-1.0
-0.1
-0.1
+0.4
carbon source
Heptanoic (C)
N.D.
-0.7
-0.4
+0.3
+0.2
stress
R2A with D-Cycloserine 0.5 mg/ml
N.D.
-1.4
+0.6
+0.0
+0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
+0.8
-1.2
-0.5
+0.6
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
+0.8
-0.4
-0.5
+0.6
stress
R2A with Paraquat dichloride 0.064 mg/ml
N.D.
+1.0
-0.2
+0.3
+0.0
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
N.D.
+0.5
+0.7
+0.1
-0.2
stress
R2A with Cisplatin 0.001 mg/ml
N.D.
+0.2
-0.1
+0.6
+0.6
stress
R2A with Lomefloxacin 0.00075 mM
N.D.
+1.4
+0.5
+0.4
+0.1
stress
R2A with Sisomicin 0.035 mg/ml
N.D.
+3.1
-0.3
+0.3
+0.2
stress
R2A with Lomefloxacin 0.001 mM
N.D.
+1.2
+1.2
+0.5
+0.7
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RR42_RS06275
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