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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS06120 and RR42_RS06125 are separated by 325 nucleotides
RR42_RS06125 and RR42_RS06130 are separated by 187 nucleotides
RR42_RS06130 and RR42_RS06135 are separated by 262 nucleotides
RR42_RS06135 and RR42_RS06140 are separated by 95 nucleotides
RR42_RS06120: RR42_RS06120 - transcriptional regulator, at 1,344,095 to 1,345,033
_RS06120
RR42_RS06125: RR42_RS06125 - phosphogluconate dehydratase, at 1,345,359 to 1,347,245
_RS06125
RR42_RS06130: RR42_RS06130 - Gluconokinase (EC 2.7.1.12)
(from data)
, at 1,347,433 to 1,347,942
_RS06130
RR42_RS06135: RR42_RS06135 - hypothetical protein, at 1,348,205 to 1,349,677
_RS06135
RR42_RS06140: RR42_RS06140 - hypothetical protein, at 1,349,773 to 1,350,726
_RS06140
Group
Condition
RR42
_RS06120
RR42
_RS06125
RR42
_RS06130
RR42
_RS06135
RR42
_RS06140
carbon source
D-Gluconic Acid (C)
-2.7
-2.2
-4.1
-0.6
-0.6
carbon source
D-Fructose (C)
-4.7
-2.0
-0.4
+0.1
+0.1
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-1.1
-1.6
+0.0
-0.1
-0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-1.3
-0.9
-0.4
-0.0
-0.0
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-1.2
-1.1
-0.2
-0.1
-0.1
stress
R2A with Lomefloxacin 0.001 mM
-2.1
-0.2
-0.4
+0.0
+0.2
stress
R2A with Chloride 300 mM
-0.0
-0.9
-0.7
+0.0
-0.3
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
-0.5
-1.0
-0.1
-0.0
-0.1
temperature
R2A 23C
-0.4
-1.2
+0.1
+0.1
-0.0
carbon source
Pimelic (C)
+0.7
-2.0
+0.0
-0.0
-0.2
stress
R2A with Chloride 300 mM
-0.2
-0.6
+0.2
-0.1
-0.7
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.4
-1.2
+0.2
+0.1
+0.1
stress
R2A with copper (II) chloride 0.25 mM
-1.6
+0.1
-0.0
+0.2
+0.1
carbon source
adipate (C)
+0.9
-1.5
-0.0
-0.1
-0.3
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.5
-0.4
+0.4
+0.1
-0.3
carbon source
Valeric (C)
+0.2
-0.9
-0.2
+0.2
+0.0
stress
R2A with Cisplatin 0.001 mg/ml
-0.5
-0.9
+0.3
+0.1
+0.3
carbon source
L-Lactate (C)
-0.3
+0.5
-0.4
-0.1
-0.2
carbon source
L-Tryptophan (C)
-0.5
+0.5
-0.4
+0.1
-0.0
carbon source
Pimelic (C)
+0.4
-0.7
+0.1
-0.1
-0.2
stress
R2A with Nickel (II) chloride 0.35 mM
-0.8
+0.9
-0.4
+0.2
-0.3
stress
R2A with Cisplatin 0.001 mg/ml
+0.6
-1.0
+0.2
+0.2
+0.1
carbon source
L-Histidine (C)
+0.2
-0.5
+0.7
+0.0
-0.2
carbon source
adipate (C)
+1.1
-1.0
+0.0
+0.1
+0.0
carbon source
Octanoic (C)
+1.0
+0.1
-0.4
+0.2
-0.1
carbon source
Dodecandioic (C)
+0.7
-0.2
+0.1
+0.2
+0.3
stress
R2A with Cobalt chloride 0.5 mM
-0.2
+1.8
-0.1
+0.2
+0.1
stress
R2A with Cobalt chloride 0.3 mM
-0.1
+1.6
-0.1
+0.2
+0.1
carbon source
Heptanoic (C)
+0.9
+0.6
+0.2
+0.0
+0.1
stress
R2A with Nickel (II) chloride 0.5 mM
+0.6
+2.6
+0.0
+0.2
+0.1
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