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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS05975 and RR42_RS05980 are separated by 189 nucleotides
RR42_RS05980 and RR42_RS05985 are separated by 79 nucleotides
RR42_RS05985 and RR42_RS05990 are separated by 274 nucleotides
RR42_RS05990 and RR42_RS05995 are separated by 157 nucleotides
RR42_RS05975: RR42_RS05975 - ferredoxin, at 1,313,583 to 1,314,404
_RS05975
RR42_RS05980: RR42_RS05980 - TetR family transcriptional regulator, at 1,314,594 to 1,315,229
_RS05980
RR42_RS05985: RR42_RS05985 - esterase, at 1,315,309 to 1,316,550
_RS05985
RR42_RS05990: RR42_RS05990 - aromatic amino acid aminotransferase, at 1,316,825 to 1,318,021
_RS05990
RR42_RS05995: RR42_RS05995 - excinuclease ABC subunit B, at 1,318,179 to 1,320,281
_RS05995
Group
Condition
RR42
_RS05975
RR42
_RS05980
RR42
_RS05985
RR42
_RS05990
RR42
_RS05995
carbon source
Dodecandioic (C)
-0.4
+0.1
-0.3
-6.1
-0.2
carbon source
Octanoic (C)
+0.2
+0.5
-0.9
-5.2
-0.5
carbon source
Octanoic (C)
-0.1
+0.7
-1.0
-5.1
-0.3
carbon source
propionate (C)
-0.2
+0.1
-0.3
-4.7
-0.4
carbon source
4-Hydroxybenzoic Acid (C)
+0.2
-0.0
-1.3
-4.1
-0.3
carbon source
Valeric (C)
-0.2
+0.1
+0.2
-5.3
-0.2
nitrogen source
L-Threonine (N)
-0.3
-0.3
-0.3
-4.2
-0.1
carbon source
Carbon source Phenylacetic 2.5 mM
-0.7
+0.3
-1.9
-2.7
-0.2
carbon source
Azelaic (C)
+0.2
+0.1
-0.5
-4.7
-0.2
carbon source
L-Histidine (C)
-1.1
-0.3
-0.3
-2.8
-0.7
carbon source
4-Hydroxybenzoic Acid (C)
-0.0
-0.2
-1.4
-3.2
-0.3
carbon source
D,L-Lactate (C)
-0.1
+0.0
-0.3
-4.4
-0.3
carbon source
Heptanoic (C)
-0.0
+0.5
+0.4
-5.7
-0.2
carbon source
L-Malic (C)
-0.1
-0.2
-0.2
-4.4
-0.0
carbon source
Dodecandioic (C)
-0.3
+0.3
-0.3
-4.3
-0.2
nitrogen source
L-Glutamine (N)
-0.8
-0.2
+0.0
-3.9
+0.0
carbon source
succinate (C)
-0.3
+0.5
-0.3
-4.2
-0.2
carbon source
Carbon source Phenylacetic 2.5 mM
+0.2
+0.2
-2.0
-2.7
-0.2
nitrogen source
nitrite (N)
+0.3
-0.0
-0.6
-3.5
-0.6
carbon source
Valeric (C)
+0.1
+0.0
+0.9
-4.9
-0.4
carbon source
propionate (C)
+0.4
-0.0
-0.5
-4.0
-0.1
carbon source
propionate (C)
+0.4
-0.2
-0.3
-4.1
-0.1
carbon source
Suberic (C)
+0.5
+0.2
-0.2
-4.3
-0.3
carbon source
Hexanoic (C)
+0.1
+0.5
-0.3
-4.1
-0.2
carbon source
Heptanoic (C)
+0.6
+0.5
+0.2
-5.0
-0.0
carbon source
Hexanoic (C)
+0.4
+0.2
-0.1
-4.2
-0.1
carbon source
L-Tryptophan (C)
+0.8
-0.7
-0.8
-2.5
-0.2
carbon source
L-Tryptophan (C)
+1.0
-1.0
-0.7
-2.3
-0.3
carbon source
Protocatechuic Acid (C)
+0.1
+0.7
-1.5
-2.0
+0.8
carbon source
Protocatechuic Acid (C)
+0.1
+0.7
-0.8
-2.8
+1.0
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