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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS05920 and RR42_RS05925 are separated by 117 nucleotides
RR42_RS05925 and RR42_RS05930 are separated by 33 nucleotides
RR42_RS05930 and RR42_RS05935 are separated by 41 nucleotides
RR42_RS05935 and RR42_RS05940 are separated by 274 nucleotides
RR42_RS05920: RR42_RS05920 - HrcA family transcriptional regulator, at 1,304,967 to 1,306,004
_RS05920
RR42_RS05925: RR42_RS05925 - ferrochelatase, at 1,306,122 to 1,307,237
_RS05925
RR42_RS05930: RR42_RS05930 - RNA-binding protein S4, at 1,307,271 to 1,307,666
_RS05930
RR42_RS05935: RR42_RS05935 - membrane protein, at 1,307,708 to 1,307,863
_RS05935
RR42_RS05940: RR42_RS05940 - co-chaperone GrpE, at 1,308,138 to 1,308,695
_RS05940
Group
Condition
RR42
_RS05920
RR42
_RS05925
RR42
_RS05930
RR42
_RS05935
RR42
_RS05940
nitrogen source
L-Glutamine (N)
-1.4
N.D.
-1.4
-0.4
N.D.
stress
R2A with D-Cycloserine 0.5 mg/ml
-2.6
N.D.
-0.4
+0.3
N.D.
carbon source
Disodium Glutarate (C)
-1.6
N.D.
-0.7
-0.3
N.D.
stress
R2A with Nickel (II) chloride 0.5 mM
-2.2
N.D.
+0.4
-0.4
N.D.
lb
LB
-1.0
N.D.
+0.2
-1.3
N.D.
carbon source
Protocatechuic Acid (C)
-1.3
N.D.
-1.0
+0.2
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
-1.6
N.D.
-0.5
-0.1
N.D.
carbon source
succinate (C)
-1.7
N.D.
-0.3
-0.1
N.D.
carbon source
L-Proline (C)
-1.6
N.D.
-0.5
+0.1
N.D.
carbon source
L-Tryptophan (C)
-1.7
N.D.
+0.0
-0.3
N.D.
nitrogen source
L-Valine (N)
-1.4
N.D.
-0.3
-0.2
N.D.
carbon source
Heptanoic (C)
-0.5
N.D.
-0.7
-0.7
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-2.1
N.D.
+0.6
-0.2
N.D.
stress
R2A with Cobalt chloride 0.5 mM
-1.2
N.D.
+0.3
-0.6
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-1.6
N.D.
+0.2
-0.1
N.D.
nitrogen source
L-Tryptophan (N)
-1.6
N.D.
+0.1
+0.1
N.D.
carbon source
Suberic (C)
-1.5
N.D.
+0.5
-0.3
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-2.1
N.D.
+0.4
+0.4
N.D.
nitrogen source
L-Valine (N)
-1.7
N.D.
+0.1
+0.4
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
-1.1
N.D.
+0.6
-0.6
N.D.
nitrogen source
nitrite (N)
-1.7
N.D.
+0.1
+0.6
N.D.
nitrogen source
L-Tryptophan (N)
-1.6
N.D.
-0.1
+0.7
N.D.
nitrogen source
L-Phenylalanine (N)
-1.4
N.D.
+0.1
+0.3
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
-1.5
N.D.
+0.0
+0.6
N.D.
carbon source
Pimelic (C)
-1.5
N.D.
+0.2
+0.5
N.D.
carbon source
L-Malic (C)
-1.0
N.D.
-0.4
+0.6
N.D.
nitrogen source
D-Alanine (N)
-1.5
N.D.
+0.4
+0.4
N.D.
carbon source
Protocatechuic Acid (C)
-1.2
N.D.
+0.0
+0.7
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-1.0
N.D.
+0.4
+0.5
N.D.
stress
R2A with Lomefloxacin 0.001 mM
+0.7
N.D.
-0.3
+1.0
N.D.
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