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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS05665 and RR42_RS05670 are separated by 28 nucleotides
RR42_RS05670 and RR42_RS05675 overlap by 1 nucleotides
RR42_RS05675 and RR42_RS05680 are separated by 9 nucleotides
RR42_RS05680 and RR42_RS05685 are separated by 742 nucleotides
RR42_RS05665: RR42_RS05665 - urease accessory protein UreJ, at 1,246,931 to 1,247,563
_RS05665
RR42_RS05670: RR42_RS05670 - urease subunit beta, at 1,247,592 to 1,247,897
_RS05670
RR42_RS05675: RR42_RS05675 - urease subunit alpha, at 1,247,897 to 1,249,615
_RS05675
RR42_RS05680: RR42_RS05680 - urease accessory protein UreE, at 1,249,625 to 1,250,260
_RS05680
RR42_RS05685: RR42_RS05685 - urease accessory protein UreF, at 1,251,003 to 1,251,695
_RS05685
Group
Condition
RR42
_RS05665
RR42
_RS05670
RR42
_RS05675
RR42
_RS05680
RR42
_RS05685
carbon source
Protocatechuic Acid (C)
-1.2
-2.2
-0.1
-0.2
-0.5
carbon source
Suberic (C)
-2.0
-0.6
+0.0
-0.2
-0.2
carbon source
pyruvate (C)
-2.2
-0.2
-0.1
+0.0
-0.3
stress
R2A with Nickel (II) chloride 0.35 mM
-2.7
+0.4
-0.3
-0.4
+0.1
nitrogen source
casaminos (N)
-0.5
-1.0
-0.4
-0.2
-0.5
nitrogen source
nitrite (N)
-1.3
-0.5
-0.0
-0.4
-0.0
nitrogen source
L-Phenylalanine (N)
-0.8
-0.6
-0.1
-0.2
-0.6
carbon source
adipate (C)
-0.4
-1.4
-0.1
+0.1
-0.3
carbon source
Protocatechuic Acid (C)
-1.4
-1.6
+0.6
+1.0
-0.6
carbon source
Suberic (C)
-0.6
-0.8
-0.3
+0.2
-0.4
carbon source
Azelaic (C)
+0.2
-1.3
-0.6
+0.1
-0.3
nitrogen source
L-Leucine (N)
-1.1
-0.6
+0.0
-0.4
+0.2
carbon source
L-Leucine (C)
-0.5
-1.1
-0.2
+0.2
-0.2
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.8
-2.0
-0.3
+0.1
-0.3
carbon source
Pimelic (C)
-0.8
-0.4
-0.4
+0.2
-0.3
lb
LB
-1.6
+0.2
+0.1
-0.0
+0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.6
+0.5
-0.3
+0.3
-0.6
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-1.0
+1.0
-0.3
-0.1
-0.1
stress
R2A with Cisplatin 0.001 mg/ml
-1.4
+0.7
-0.0
+0.1
+0.2
stress
R2A with Nickel (II) chloride 0.25 mM
+1.0
-0.6
+0.1
-0.5
-0.3
carbon source
Azelaic (C)
+1.0
+0.2
-0.3
-0.2
-0.5
carbon source
Dodecandioic (C)
+1.1
-0.0
-0.3
+0.2
-0.6
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.8
+0.3
+0.2
+0.4
+0.3
stress
R2A with Vancomycin 0.5 mg/ml
+1.1
-1.0
+0.4
+0.6
-0.5
stress
R2A with Cobalt chloride 0.5 mM
+1.0
-0.2
-0.0
-0.3
+0.6
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
+0.3
+1.0
-0.1
+0.3
-0.4
carbon source
Carbon source Phenylacetic 2.5 mM
+0.8
+0.7
-0.0
-0.5
+0.1
stress
R2A with Bacitracin 0.5 mg/ml
+0.7
+0.5
+0.2
+0.6
-0.2
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.7
+0.7
-0.0
+0.3
+0.3
stress
R2A with Lomefloxacin 0.001 mM
+1.2
+0.4
+0.6
+0.6
-0.4
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