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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS05580 and RR42_RS05585 are separated by 52 nucleotides
RR42_RS05585 and RR42_RS05590 are separated by 232 nucleotides
RR42_RS05590 and RR42_RS05595 are separated by 95 nucleotides
RR42_RS05595 and RR42_RS05600 are separated by 13 nucleotides
RR42_RS05580: RR42_RS05580 - membrane protein, at 1,230,144 to 1,230,452
_RS05580
RR42_RS05585: RR42_RS05585 - ADP-ribose pyrophosphatase, at 1,230,505 to 1,231,128
_RS05585
RR42_RS05590: RR42_RS05590 - hypothetical protein, at 1,231,361 to 1,231,810
_RS05590
RR42_RS05595: RR42_RS05595 - acyl-CoA dehydrogenase, at 1,231,906 to 1,233,108
_RS05595
RR42_RS05600: RR42_RS05600 - acyl-CoA dehydrogenase, at 1,233,122 to 1,234,240
_RS05600
Group
Condition
RR42
_RS05580
RR42
_RS05585
RR42
_RS05590
RR42
_RS05595
RR42
_RS05600
carbon source
Dodecandioic (C)
N.D.
-0.3
-4.3
-3.9
-2.8
carbon source
Dodecandioic (C)
N.D.
-0.0
-2.2
-3.6
-3.9
carbon source
Azelaic (C)
N.D.
+0.1
-2.5
-3.1
-3.1
carbon source
Suberic (C)
N.D.
-0.2
-1.8
-2.9
-3.0
carbon source
Azelaic (C)
N.D.
+0.1
-2.0
-2.2
-1.9
carbon source
Suberic (C)
N.D.
-0.2
-1.6
-2.4
-1.5
carbon source
Heptanoic (C)
N.D.
-0.1
-0.5
-0.8
-0.4
carbon source
Heptanoic (C)
N.D.
+0.0
-0.4
-0.8
-0.5
stress
R2A with Cobalt chloride 0.5 mM
N.D.
-0.5
-0.4
-0.4
-0.3
stress
R2A with Cobalt chloride 0.3 mM
N.D.
-0.4
-0.8
+0.1
+0.2
stress
R2A with Zinc 0.1 mM
N.D.
-1.1
-0.3
+0.5
+0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
-0.6
-0.8
+0.1
+0.4
carbon source
pyruvate (C)
N.D.
+0.3
-0.4
-0.2
-0.5
stress
R2A with Cisplatin 0.001 mg/ml
N.D.
+0.3
-0.2
-0.3
-0.5
nitrogen source
L-Valine (N)
N.D.
+0.1
-0.7
-0.3
+0.2
carbon source
L-Tryptophan (C)
N.D.
-0.3
-0.5
-0.2
+0.5
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
-0.1
+0.1
-0.8
+0.3
stress
R2A with Lomefloxacin 0.001 mM
N.D.
-1.4
-0.7
+0.4
+1.3
carbon source
Trisodium citrate (C)
N.D.
+0.2
-0.7
-0.2
+0.3
nitrogen source
D-Alanine (N)
N.D.
-0.5
+0.1
-0.3
+0.3
stress
R2A with Nickel (II) chloride 0.35 mM
N.D.
-0.1
-0.2
-0.9
+0.9
carbon source
propionate (C)
N.D.
-0.4
-0.4
+0.1
+0.6
carbon source
Ethanol (C)
N.D.
-0.5
+0.1
+0.2
+0.4
carbon source
Valeric (C)
N.D.
+0.4
+0.2
-0.6
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
N.D.
+0.2
-0.6
+0.4
+0.3
nitrogen source
L-Glutamine (N)
N.D.
+0.8
-0.8
+0.1
+0.4
carbon source
Hexanoic (C)
N.D.
+0.2
+0.3
+0.5
+0.2
carbon source
Carbon source Phenylacetic 2.5 mM
N.D.
+0.5
+0.4
+0.3
+0.3
carbon source
adipate (C)
N.D.
-0.5
+0.8
+2.5
+2.5
carbon source
adipate (C)
N.D.
-0.0
+1.1
+2.3
+2.3
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