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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS05565 and RR42_RS05570 are separated by 13 nucleotides
RR42_RS05570 and RR42_RS05575 are separated by 18 nucleotides
RR42_RS05575 and RR42_RS05580 are separated by 22 nucleotides
RR42_RS05580 and RR42_RS05585 are separated by 52 nucleotides
RR42_RS05565: RR42_RS05565 - NADH:ubiquinone oxidoreductase subunit L, at 1,225,048 to 1,227,147
_RS05565
RR42_RS05570: RR42_RS05570 - NADH:ubiquinone oxidoreductase subunit M, at 1,227,161 to 1,228,627
_RS05570
RR42_RS05575: RR42_RS05575 - NADH:ubiquinone oxidoreductase subunit N, at 1,228,646 to 1,230,121
_RS05575
RR42_RS05580: RR42_RS05580 - membrane protein, at 1,230,144 to 1,230,452
_RS05580
RR42_RS05585: RR42_RS05585 - ADP-ribose pyrophosphatase, at 1,230,505 to 1,231,128
_RS05585
Group
Condition
RR42
_RS05565
RR42
_RS05570
RR42
_RS05575
RR42
_RS05580
RR42
_RS05585
stress
R2A with Lomefloxacin 0.001 mM
N.D.
N.D.
N.D.
N.D.
-1.4
stress
R2A with Zinc 0.1 mM
N.D.
N.D.
N.D.
N.D.
-1.1
carbon source
D,L-Lactate (C)
N.D.
N.D.
N.D.
N.D.
-0.8
carbon source
pyruvate (C)
N.D.
N.D.
N.D.
N.D.
-0.6
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
N.D.
N.D.
N.D.
-0.6
stress
R2A with Paraquat dichloride 0.064 mg/ml
N.D.
N.D.
N.D.
N.D.
-0.6
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
N.D.
N.D.
N.D.
N.D.
-0.5
nitrogen source
D-Alanine (N)
N.D.
N.D.
N.D.
N.D.
-0.5
carbon source
Ethanol (C)
N.D.
N.D.
N.D.
N.D.
-0.5
carbon source
adipate (C)
N.D.
N.D.
N.D.
N.D.
-0.5
stress
R2A with Cobalt chloride 0.5 mM
N.D.
N.D.
N.D.
N.D.
-0.5
carbon source
propionate (C)
N.D.
N.D.
N.D.
N.D.
-0.4
carbon source
succinate (C)
N.D.
N.D.
N.D.
N.D.
-0.4
nitrogen source
Glycine (N)
N.D.
N.D.
N.D.
N.D.
-0.4
stress
R2A with Cobalt chloride 0.3 mM
N.D.
N.D.
N.D.
N.D.
-0.4
carbon source
succinate (C)
N.D.
N.D.
N.D.
N.D.
-0.4
nitrogen source
casaminos (N)
N.D.
N.D.
N.D.
N.D.
-0.4
carbon source
L-Tryptophan (C)
N.D.
N.D.
N.D.
N.D.
-0.3
carbon source
Dodecandioic (C)
N.D.
N.D.
N.D.
N.D.
-0.3
temperature
R2A 23C
N.D.
N.D.
N.D.
N.D.
+0.3
stress
R2A with Sisomicin 0.035 mg/ml
N.D.
N.D.
N.D.
N.D.
+0.4
carbon source
Valeric (C)
N.D.
N.D.
N.D.
N.D.
+0.4
carbon source
Protocatechuic Acid (C)
N.D.
N.D.
N.D.
N.D.
+0.4
temperature
R2A 23C
N.D.
N.D.
N.D.
N.D.
+0.4
carbon source
succinate (C)
N.D.
N.D.
N.D.
N.D.
+0.5
carbon source
Carbon source Phenylacetic 2.5 mM
N.D.
N.D.
N.D.
N.D.
+0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
N.D.
N.D.
N.D.
N.D.
+0.6
carbon source
D-Lactate (C)
N.D.
N.D.
N.D.
N.D.
+0.6
carbon source
Protocatechuic Acid (C)
N.D.
N.D.
N.D.
N.D.
+0.7
nitrogen source
L-Glutamine (N)
N.D.
N.D.
N.D.
N.D.
+0.8
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