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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS05490 and RR42_RS05495 are separated by 128 nucleotides
RR42_RS05495 and RR42_RS05500 are separated by 46 nucleotides
RR42_RS05500 and RR42_RS05505 are separated by 208 nucleotides
RR42_RS05505 and RR42_RS05510 are separated by 164 nucleotides
RR42_RS05490: RR42_RS05490 - NAD(P)H-quinone oxidoreductase, at 1,212,370 to 1,213,374
_RS05490
RR42_RS05495: RR42_RS05495 - triosephosphate isomerase, at 1,213,503 to 1,214,240
_RS05495
RR42_RS05500: RR42_RS05500 - preprotein translocase subunit SecG, at 1,214,287 to 1,214,655
_RS05500
RR42_RS05505: RR42_RS05505 - tRNA-Leu, at 1,214,864 to 1,214,948
_RS05505
RR42_RS05510: RR42_RS05510 - NADH:ubiquinone oxidoreductase subunit A, at 1,215,113 to 1,215,472
_RS05510
Group
Condition
RR42
_RS05490
RR42
_RS05495
RR42
_RS05500
RR42
_RS05505
RR42
_RS05510
stress
R2A with Vancomycin 0.5 mg/ml
+0.2
N.D.
-3.0
N.D.
N.D.
carbon source
D-Lactate (C)
-0.2
N.D.
-2.1
N.D.
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
-0.7
N.D.
-1.4
N.D.
N.D.
carbon source
Protocatechuic Acid (C)
+0.2
N.D.
-2.3
N.D.
N.D.
carbon source
pyruvate (C)
-0.1
N.D.
-1.9
N.D.
N.D.
temperature
R2A 37C
-0.3
N.D.
-1.3
N.D.
N.D.
stress
R2A with A22 0.01 mg/ml
+0.0
N.D.
-1.6
N.D.
N.D.
nitrogen source
L-Isoleucine (N)
-0.3
N.D.
-1.3
N.D.
N.D.
carbon source
Valeric (C)
-0.1
N.D.
-1.4
N.D.
N.D.
carbon source
Hexanoic (C)
-0.0
N.D.
-1.4
N.D.
N.D.
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.3
N.D.
-1.1
N.D.
N.D.
carbon source
L-Glutamine (C)
-0.4
N.D.
-1.0
N.D.
N.D.
carbon source
adipate (C)
-0.4
N.D.
-0.9
N.D.
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
+0.0
N.D.
-1.3
N.D.
N.D.
lb
LB
+0.8
N.D.
-2.0
N.D.
N.D.
carbon source
succinate (C)
+0.1
N.D.
-1.3
N.D.
N.D.
stress
R2A with Cobalt chloride 0.5 mM
-0.3
N.D.
-1.0
N.D.
N.D.
carbon source
D-Lactate (C)
+0.1
N.D.
-1.3
N.D.
N.D.
stress
R2A with Cephalothin 0.25 mg/ml
+0.2
N.D.
-1.1
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.25 mM
+0.3
N.D.
-1.2
N.D.
N.D.
carbon source
D-Fructose (C)
+0.2
N.D.
-1.1
N.D.
N.D.
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.3
N.D.
-1.2
N.D.
N.D.
stress
R2A with copper (II) chloride 0.25 mM
+0.5
N.D.
-0.9
N.D.
N.D.
nitrogen source
L-Phenylalanine (N)
+0.1
N.D.
+1.1
N.D.
N.D.
stress
R2A with Lomefloxacin 0.00075 mM
+0.2
N.D.
+1.1
N.D.
N.D.
carbon source
Carbon source Phenylacetic 2.5 mM
-0.0
N.D.
+1.4
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
N.D.
+1.6
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
N.D.
+1.6
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.4
N.D.
+1.6
N.D.
N.D.
nitrogen source
L-Glutamine (N)
+0.0
N.D.
+2.0
N.D.
N.D.
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