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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS05365 and RR42_RS05370 overlap by 2 nucleotides
RR42_RS05370 and RR42_RS05375 are separated by 24 nucleotides
RR42_RS05375 and RR42_RS05380 are separated by 38 nucleotides
RR42_RS05380 and RR42_RS05385 are separated by 148 nucleotides
RR42_RS05365: RR42_RS05365 - hypothetical protein, at 1,186,943 to 1,187,275
_RS05365
RR42_RS05370: RR42_RS05370 - ABC transporter permease, at 1,187,274 to 1,189,817
_RS05370
RR42_RS05375: RR42_RS05375 - hemoglobin-like protein, at 1,189,842 to 1,190,279
_RS05375
RR42_RS05380: RR42_RS05380 - membrane protein, at 1,190,318 to 1,190,935
_RS05380
RR42_RS05385: RR42_RS05385 - LOG family protein, at 1,191,084 to 1,191,668
_RS05385
Group
Condition
RR42
_RS05365
RR42
_RS05370
RR42
_RS05375
RR42
_RS05380
RR42
_RS05385
stress
R2A with Nickel (II) chloride 0.35 mM
+0.2
-0.3
-2.0
N.D.
+0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.7
+0.2
-0.1
N.D.
-1.2
carbon source
L-Lactate (C)
-0.5
-0.1
-0.2
N.D.
-0.7
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.9
+0.2
-0.8
N.D.
+0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.5
+0.1
-0.4
N.D.
-0.5
temperature
R2A 23C
-0.5
-0.1
-0.5
N.D.
-0.2
carbon source
propionate (C)
-0.1
-0.0
-0.3
N.D.
-0.8
carbon source
L-Histidine (C)
-0.2
+0.1
-0.6
N.D.
-0.5
stress
R2A with nitrate 200 mM
-0.5
-0.1
+0.1
N.D.
-0.7
stress
R2A with copper (II) chloride 0.25 mM
-0.2
+0.1
-0.2
N.D.
-0.9
nitrogen source
L-Glutamine (N)
-0.7
+0.1
-0.6
N.D.
+0.4
carbon source
Dodecandioic (C)
-0.3
+0.2
-0.8
N.D.
+0.3
carbon source
Heptanoic (C)
-0.7
+0.2
-0.4
N.D.
+0.3
carbon source
adipate (C)
-0.4
+0.0
+0.3
N.D.
-0.5
carbon source
a-Ketoglutaric (C)
+0.3
+0.2
-0.4
N.D.
-0.5
carbon source
Valeric (C)
-0.4
+0.1
-0.5
N.D.
+0.4
r2a
R2A
+0.5
-0.1
-0.7
N.D.
+0.1
nitrogen source
L-Isoleucine (N)
-0.2
+0.0
-0.8
N.D.
+0.7
carbon source
Azelaic (C)
-0.5
+0.2
+0.5
N.D.
-0.4
carbon source
Pimelic (C)
-0.6
+0.2
+0.4
N.D.
-0.2
carbon source
succinate (C)
-0.3
+0.1
-0.5
N.D.
+0.5
carbon source
Protocatechuic Acid (C)
-0.4
+0.1
+0.7
N.D.
-0.5
nitrogen source
casaminos (N)
+0.1
-0.1
-0.6
N.D.
+0.7
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.0
+0.1
+0.5
N.D.
-0.6
carbon source
D-Gluconic Acid (C)
+0.3
-0.1
+0.4
N.D.
-0.6
nitrogen source
nitrite (N)
-0.4
-0.2
-0.1
N.D.
+0.9
nitrogen source
L-Tryptophan (N)
-0.4
+0.1
+0.1
N.D.
+0.9
stress
R2A with Lomefloxacin 0.001 mM
+0.8
-0.1
+0.5
N.D.
-0.3
nitrogen source
L-Phenylalanine (N)
-0.2
+0.3
+0.0
N.D.
+0.8
stress
R2A with Nickel (II) chloride 0.5 mM
+0.6
+0.3
+0.1
N.D.
+0.8
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