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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS05335 and RR42_RS05340 are separated by 12 nucleotides
RR42_RS05340 and RR42_RS05345 are separated by 221 nucleotides
RR42_RS05345 and RR42_RS05350 are separated by 63 nucleotides
RR42_RS05350 and RR42_RS05355 are separated by 178 nucleotides
RR42_RS05335: RR42_RS05335 - aldehyde oxidase, at 1,179,015 to 1,181,372
_RS05335
RR42_RS05340: RR42_RS05340 - FAD-binding molybdopterin dehydrogenase, at 1,181,385 to 1,182,899
_RS05340
RR42_RS05345: RR42_RS05345 - LysR family transcriptional regulator, at 1,183,121 to 1,184,065
_RS05345
RR42_RS05350: RR42_RS05350 - tungsten ABC transporter substrate-binding protein, at 1,184,129 to 1,184,956
_RS05350
RR42_RS05355: RR42_RS05355 - LysR family transcriptional regulator, at 1,185,135 to 1,186,232
_RS05355
Group
Condition
RR42
_RS05335
RR42
_RS05340
RR42
_RS05345
RR42
_RS05350
RR42
_RS05355
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-4.0
-3.5
-2.9
+0.5
-0.5
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-3.0
-2.5
-3.1
+0.7
+0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-1.7
-2.2
-1.9
+1.0
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-1.8
-2.3
-1.4
+1.1
-0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-1.5
-1.9
-1.4
+0.9
+0.1
stress
R2A with Nickel (II) chloride 0.35 mM
-0.4
-0.5
+0.1
-0.2
-0.8
stress
R2A with nitrate 200 mM
-0.2
-0.2
-0.2
-0.5
-0.2
carbon source
Octanoic (C)
-0.1
-0.5
-0.0
-0.0
-0.5
nitrogen source
L-Lysine (N)
-0.2
-0.0
-0.4
-0.3
-0.1
stress
R2A with Cobalt chloride 0.5 mM
-0.1
-0.3
-0.3
+0.1
-0.4
nitrogen source
L-Serine (N)
-0.2
-0.2
-0.3
+0.1
-0.4
carbon source
Valeric (C)
-0.5
-0.3
+0.0
-0.0
-0.1
stress
R2A with A22 0.01 mg/ml
-0.3
-0.3
-0.3
-0.2
+0.2
stress
R2A with Vancomycin 0.5 mg/ml
-0.2
+0.2
-0.1
-0.4
-0.3
carbon source
Carbon source Phenylacetic 2.5 mM
-0.3
-0.3
-0.3
-0.1
+0.3
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.2
-0.2
-0.4
+0.2
-0.2
stress
R2A with Cobalt chloride 0.3 mM
+0.0
+0.3
-0.3
-0.4
-0.1
stress
R2A with Sisomicin 0.035 mg/ml
+0.1
-0.1
-0.2
+0.3
-0.3
carbon source
Protocatechuic Acid (C)
-0.3
-0.2
+0.4
+0.5
-0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.3
-0.0
+0.1
+0.4
-0.6
stress
R2A with Lomefloxacin 0.00075 mM
-0.3
+0.2
+0.2
+0.6
+0.3
stress
R2A with Bacitracin 0.5 mg/ml
+0.5
+0.1
+0.3
+0.2
-0.2
stress
R2A with Chlorite 4 mM
+0.2
+0.2
+0.3
+0.2
+0.2
stress
R2A with nitrate 150 mM
+0.3
+0.2
+0.2
+0.2
+0.2
stress
R2A with Lomefloxacin 0.001 mM
+0.3
+0.3
-0.3
+0.7
+0.1
stress
R2A with Cisplatin 0.001 mg/ml
+0.3
+0.2
+0.4
+0.1
+0.2
r2a
R2A
+0.4
+0.2
+0.3
+0.1
+0.2
stress
R2A with Nickel (II) chloride 0.5 mM
+0.3
+0.3
+0.3
+0.2
+0.2
stress
R2A with nitrate 200 mM
+0.3
-0.0
+0.3
+0.3
+0.4
lb
LB
+0.1
-0.1
+0.6
+0.9
+0.3
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RR42_RS05345
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RR42_RS05350
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RR42_RS05355
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