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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS05250 and RR42_RS05255 are separated by 8 nucleotides
RR42_RS05255 and RR42_RS05260 are separated by 48 nucleotides
RR42_RS05260 and RR42_RS05265 are separated by 150 nucleotides
RR42_RS05265 and RR42_RS05270 are separated by 313 nucleotides
RR42_RS05250: RR42_RS05250 - OHCU decarboxylase, at 1,159,378 to 1,159,896
_RS05250
RR42_RS05255: RR42_RS05255 - allantoinase, at 1,159,905 to 1,160,855
_RS05255
RR42_RS05260: RR42_RS05260 - purine permease, at 1,160,904 to 1,162,310
_RS05260
RR42_RS05265: RR42_RS05265 - GntR family transcriptional regulator, at 1,162,461 to 1,163,204
_RS05265
RR42_RS05270: RR42_RS05270 - 5-hydroxyisourate hydrolase, at 1,163,518 to 1,163,871
_RS05270
Group
Condition
RR42
_RS05250
RR42
_RS05255
RR42
_RS05260
RR42
_RS05265
RR42
_RS05270
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-4.8
-5.0
-1.4
-1.6
-5.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-3.6
-5.4
-1.8
-1.9
-4.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-2.9
-3.3
-0.5
-1.3
-2.6
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-2.8
-3.2
-0.6
-1.1
-3.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-3.2
-3.5
+0.1
-0.9
-2.3
stress
R2A with Zinc 0.1 mM
-0.2
-0.6
-0.6
-0.4
-0.7
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.1
+0.0
-0.7
-0.5
-0.9
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.3
-0.7
-0.3
-0.3
-0.6
stress
R2A with Nickel (II) chloride 0.35 mM
+0.1
-0.6
+0.0
-0.4
-0.8
carbon source
Pimelic (C)
-0.1
-0.5
-0.5
-0.6
+0.2
stress
R2A with copper (II) chloride 0.25 mM
-0.3
+0.4
-0.0
-0.4
-1.0
carbon source
Heptanoic (C)
+0.1
+0.4
-0.6
-0.6
-0.1
carbon source
Octanoic (C)
+0.3
+0.3
-0.8
-0.1
-0.1
nitrogen source
D-Alanine (N)
-0.1
-0.1
+0.5
-0.7
-0.1
nitrogen source
nitrite (N)
+0.2
-0.2
+0.4
-1.0
+0.2
carbon source
D,L-Lactate (C)
-0.3
-0.0
+0.7
-0.4
-0.1
carbon source
D-Gluconic Acid (C)
-0.5
+0.2
+0.4
-0.4
+0.2
carbon source
L-Alanine (C)
-0.3
+0.2
+0.6
-0.5
-0.0
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.3
-0.4
+0.5
+0.1
+0.3
lb
LB
+0.1
+0.3
-0.8
+0.1
+0.6
carbon source
L-Leucine (C)
+0.1
+0.2
+0.7
-0.6
+0.2
carbon source
succinate (C)
+0.0
+0.5
-0.5
-0.0
+0.7
nitrogen source
L-Asparagine (N)
-0.0
+0.4
+0.8
-0.3
-0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.3
-0.1
+0.7
+0.4
-0.2
carbon source
Protocatechuic Acid (C)
+1.2
-0.2
+0.3
-0.6
+0.6
carbon source
propionate (C)
+0.2
+0.5
-0.1
+0.3
+0.5
r2a
R2A
+0.4
+0.3
+0.2
+0.3
+0.4
carbon source
Protocatechuic Acid (C)
+1.0
+0.2
+0.7
+0.1
-0.1
temperature
R2A 37C
+0.4
+0.2
+0.2
+0.8
+0.3
stress
R2A with Cisplatin 0.001 mg/ml
+0.8
+0.6
+0.3
+0.3
+0.5
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