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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS05015 and RR42_RS05020 are separated by 73 nucleotides
RR42_RS05020 and RR42_RS05025 are separated by 234 nucleotides
RR42_RS05025 and RR42_RS05030 are separated by 326 nucleotides
RR42_RS05030 and RR42_RS05035 are separated by 296 nucleotides
RR42_RS05015: RR42_RS05015 - peptidase, at 1,107,390 to 1,107,956
_RS05015
RR42_RS05020: RR42_RS05020 - SAM-dependent methyltransferase, at 1,108,030 to 1,108,857
_RS05020
RR42_RS05025: RR42_RS05025 - bestrophin, at 1,109,092 to 1,110,045
_RS05025
RR42_RS05030: RR42_RS05030 - hypothetical protein, at 1,110,372 to 1,112,039
_RS05030
RR42_RS05035: RR42_RS05035 - LuxR family transcriptional regulator, at 1,112,336 to 1,112,839
_RS05035
Group
Condition
RR42
_RS05015
RR42
_RS05020
RR42
_RS05025
RR42
_RS05030
RR42
_RS05035
carbon source
Protocatechuic Acid (C)
-0.1
-0.0
-0.6
-1.1
+0.1
stress
R2A with copper (II) chloride 0.25 mM
-0.1
-0.0
-0.4
-0.5
-0.5
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.1
+0.1
-0.2
-0.9
-0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.5
-0.3
+0.0
-0.2
-0.2
carbon source
Valeric (C)
-0.1
+0.0
-0.9
-0.2
+0.0
carbon source
Protocatechuic Acid (C)
-0.4
-0.0
-0.4
+0.2
-0.4
stress
R2A with nitrate 200 mM
+0.1
-0.0
-0.4
-0.7
-0.0
nitrogen source
L-Glutamine (N)
-0.2
-0.0
-0.3
-0.5
+0.2
stress
R2A with Cobalt chloride 0.5 mM
+0.1
+0.1
+0.0
-0.8
-0.4
carbon source
L-Asparagine (C)
-0.1
-0.1
-0.7
+0.4
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.0
-0.3
-0.4
+0.6
-0.6
carbon source
4-Hydroxybenzoic Acid (C)
-0.0
+0.1
+0.2
-1.0
+0.1
carbon source
Octanoic (C)
-0.3
+0.3
-0.1
+0.2
-0.4
stress
R2A with Lomefloxacin 0.00075 mM
-0.1
+0.2
-0.7
+0.2
+0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.0
-0.4
-0.4
+0.8
-0.1
stress
R2A with Nickel (II) chloride 0.35 mM
-0.2
-0.2
-0.3
+0.5
+0.5
stress
R2A with Cisplatin 0.001 mg/ml
-0.1
-0.2
+0.7
-0.4
+0.3
carbon source
Disodium Glutarate (C)
-0.2
+0.3
+0.0
+0.5
-0.2
nitrogen source
L-Valine (N)
-0.2
+0.1
-0.3
+0.4
+0.4
carbon source
D-Gluconic Acid (C)
-0.2
+0.3
-0.2
+0.6
-0.0
carbon source
Hexanoic (C)
-0.3
+0.3
+0.3
+0.3
-0.1
nitrogen source
casaminos (N)
+0.3
+0.3
-0.2
+0.3
+0.1
stress
R2A with Vancomycin 0.5 mg/ml
+0.0
+0.7
+0.3
+0.2
-0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
+0.1
+0.2
+0.6
+0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
+0.5
+0.5
+0.2
+0.2
carbon source
Carbon source Phenylacetic 2.5 mM
+0.3
+0.4
-0.1
+0.5
+0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.1
+0.2
+0.3
+0.4
+0.4
lb
LB
+0.1
+0.3
+0.3
+0.8
+0.1
stress
R2A with Lomefloxacin 0.001 mM
+0.7
+0.8
-0.6
+1.2
-0.3
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.1
+5.0
+0.2
-0.1
+0.1
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RR42_RS05025
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