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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS04925 and RR42_RS04930 are separated by 123 nucleotides
RR42_RS04930 and RR42_RS04935 are separated by 274 nucleotides
RR42_RS04935 and RR42_RS04940 are separated by 108 nucleotides
RR42_RS04940 and RR42_RS04945 are separated by 104 nucleotides
RR42_RS04925: RR42_RS04925 - transcription elongation factor GreB, at 1,092,489 to 1,093,085
_RS04925
RR42_RS04930: RR42_RS04930 - tRNA-Arg, at 1,093,209 to 1,093,285
_RS04930
RR42_RS04935: RR42_RS04935 - hypothetical protein, at 1,093,560 to 1,094,417
_RS04935
RR42_RS04940: RR42_RS04940 - hypothetical protein, at 1,094,526 to 1,094,807
_RS04940
RR42_RS04945: RR42_RS04945 - tRNA-Met, at 1,094,912 to 1,094,987
_RS04945
Group
Condition
RR42
_RS04925
RR42
_RS04930
RR42
_RS04935
RR42
_RS04940
RR42
_RS04945
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.4
N.D.
-0.8
+0.2
N.D.
nitrogen source
nitrite (N)
-0.5
N.D.
-0.3
-0.0
N.D.
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.6
N.D.
-1.0
-0.3
N.D.
carbon source
Protocatechuic Acid (C)
+0.4
N.D.
-0.3
-0.7
N.D.
stress
R2A with Dimethyl Sulfoxide 5 vol%
+0.3
N.D.
-0.1
-0.5
N.D.
carbon source
Dodecandioic (C)
+0.2
N.D.
-0.3
-0.2
N.D.
stress
R2A with Lomefloxacin 0.00075 mM
+0.1
N.D.
+0.2
-0.5
N.D.
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.2
N.D.
-0.5
+0.1
N.D.
stress
R2A with Cobalt chloride 0.3 mM
-0.1
N.D.
-0.5
+0.4
N.D.
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.3
N.D.
-0.2
-0.3
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.2
N.D.
-0.4
+0.5
N.D.
stress
R2A with Lomefloxacin 0.001 mM
+0.4
N.D.
+0.5
-1.0
N.D.
nitrogen source
L-Asparagine (N)
+0.2
N.D.
-0.4
+0.2
N.D.
stress
R2A with Zinc 0.1 mM
+0.2
N.D.
-0.5
+0.3
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
+0.3
N.D.
+0.3
-0.5
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
+0.5
N.D.
-0.7
+0.3
N.D.
nitrogen source
L-Valine (N)
-0.0
N.D.
-0.3
+0.5
N.D.
stress
R2A with Nickel (II) chloride 0.5 mM
+0.3
N.D.
-0.2
+0.2
N.D.
carbon source
D,L-Lactate (C)
+0.3
N.D.
+0.3
-0.3
N.D.
carbon source
Ethanol (C)
+0.3
N.D.
+0.3
-0.3
N.D.
stress
R2A with D-Cycloserine 0.01 mg/ml
+0.1
N.D.
+0.4
-0.2
N.D.
carbon source
Carbon source Phenylacetic 2.5 mM
-0.2
N.D.
+0.4
+0.1
N.D.
carbon source
Protocatechuic Acid (C)
+0.7
N.D.
-0.0
-0.3
N.D.
stress
R2A with Cobalt chloride 0.5 mM
+0.2
N.D.
+0.5
-0.2
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
+0.7
N.D.
+0.2
-0.1
N.D.
carbon source
L-Leucine (C)
+0.3
N.D.
+0.5
+0.0
N.D.
carbon source
Carbon source D,L-Lactate 10 mM
+0.0
N.D.
+0.7
+0.1
N.D.
carbon source
D,L-Lactate (C)
+0.0
N.D.
+0.7
+0.0
N.D.
carbon source
Carbon source Phenylacetic 2.5 mM
+0.1
N.D.
+0.4
+0.3
N.D.
nitrogen source
L-Lysine (N)
+0.2
N.D.
+0.5
+0.2
N.D.
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