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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS04870 and RR42_RS04875 are separated by 294 nucleotides
RR42_RS04875 and RR42_RS04880 are separated by 74 nucleotides
RR42_RS04880 and RR42_RS04885 overlap by 4 nucleotides
RR42_RS04885 and RR42_RS04890 are separated by 13 nucleotides
RR42_RS04870: RR42_RS04870 - tRNA-Ser, at 1,081,862 to 1,081,951
_RS04870
RR42_RS04875: RR42_RS04875 - membrane protein, at 1,082,246 to 1,082,752
_RS04875
RR42_RS04880: RR42_RS04880 - coproporphyrinogen III oxidase, at 1,082,827 to 1,084,077
_RS04880
RR42_RS04885: RR42_RS04885 - nucleoside-triphosphate diphosphatase, at 1,084,074 to 1,084,691
_RS04885
RR42_RS04890: RR42_RS04890 - ribonuclease PH, at 1,084,705 to 1,085,424
_RS04890
Group
Condition
RR42
_RS04870
RR42
_RS04875
RR42
_RS04880
RR42
_RS04885
RR42
_RS04890
nitrogen source
nitrite (N)
N.D.
-0.4
-0.4
-0.4
-1.3
nitrogen source
L-Leucine (N)
N.D.
-0.2
-1.0
-0.4
-0.7
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
N.D.
-0.2
-0.6
+0.0
-1.5
carbon source
L-Leucine (C)
N.D.
-0.2
-1.6
-0.6
+0.2
stress
R2A with Cephalothin 0.25 mg/ml
N.D.
-0.0
-0.8
-0.3
-1.0
lb
LB
N.D.
+0.7
-0.1
-1.0
-1.7
carbon source
Pimelic (C)
N.D.
-0.3
-1.6
-0.0
-0.3
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
-0.4
-0.5
-0.2
-0.9
carbon source
Dodecandioic (C)
N.D.
-0.4
-0.5
-0.1
-1.0
carbon source
Dodecandioic (C)
N.D.
-0.1
-0.5
+0.2
-1.6
carbon source
Heptanoic (C)
N.D.
-0.4
-1.0
-0.1
-0.5
carbon source
Heptanoic (C)
N.D.
-0.3
-1.0
-0.3
-0.4
nitrogen source
L-Valine (N)
N.D.
-0.1
-0.6
-0.1
-1.2
carbon source
Azelaic (C)
N.D.
-0.3
-0.7
-0.1
-0.8
carbon source
pyruvate (C)
N.D.
-0.1
-0.8
-0.4
-0.5
carbon source
Octanoic (C)
N.D.
+0.1
-1.2
-0.2
-0.5
nitrogen source
L-Threonine (N)
N.D.
-0.4
-0.5
-0.3
-0.6
carbon source
Pimelic (C)
N.D.
-0.1
-1.3
-0.4
+0.1
carbon source
L-Glutamine (C)
N.D.
-0.0
-0.6
-0.3
-0.8
carbon source
L-Leucine (C)
N.D.
-0.0
-1.4
-0.5
+0.3
carbon source
Disodium Glutarate (C)
N.D.
-0.1
-1.3
-0.6
+0.4
carbon source
L-Tryptophan (C)
N.D.
+0.1
-1.0
-0.3
-0.4
carbon source
Disodium Glutarate (C)
N.D.
-0.3
-0.7
-0.4
+0.7
stress
R2A with Cisplatin 0.001 mg/ml
N.D.
-0.1
-0.8
-0.2
+0.6
stress
R2A with Nickel (II) chloride 0.5 mM
N.D.
-0.4
-0.5
-0.1
+1.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
N.D.
+0.2
+0.4
+0.5
-0.9
stress
R2A with Nickel (II) chloride 0.35 mM
N.D.
+0.3
-0.6
-0.3
+1.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
N.D.
-0.1
+0.7
+0.6
-0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
+0.2
+0.5
+0.8
-0.2
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
N.D.
-0.2
+0.7
+0.5
+1.7
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