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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS04740 and RR42_RS04745 are separated by 438 nucleotides
RR42_RS04745 and RR42_RS04750 are separated by 114 nucleotides
RR42_RS04750 and RR42_RS04755 are separated by 205 nucleotides
RR42_RS04755 and RR42_RS04760 are separated by 440 nucleotides
RR42_RS04740: RR42_RS04740 - ATP-binding protein, at 1,054,984 to 1,056,534
_RS04740
RR42_RS04745: RR42_RS04745 - uracil phosphoribosyltransferase, at 1,056,973 to 1,057,623
_RS04745
RR42_RS04750: RR42_RS04750 - ABC transporter substrate-binding protein, at 1,057,738 to 1,058,739
_RS04750
RR42_RS04755: RR42_RS04755 - hypothetical protein, at 1,058,945 to 1,060,069
_RS04755
RR42_RS04760: RR42_RS04760 - multidrug DMT transporter permease, at 1,060,510 to 1,061,400
_RS04760
Group
Condition
RR42
_RS04740
RR42
_RS04745
RR42
_RS04750
RR42
_RS04755
RR42
_RS04760
stress
R2A with Cobalt chloride 0.5 mM
-0.3
-0.7
-0.0
-0.1
+0.0
stress
R2A with Lomefloxacin 0.001 mM
-0.4
-0.0
-0.0
-0.6
+0.0
stress
R2A with Vancomycin 0.5 mg/ml
-0.3
-0.0
-0.2
-0.2
-0.2
stress
R2A with Cobalt chloride 0.3 mM
-0.0
-0.9
+0.0
+0.2
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
-0.3
-0.3
-0.1
-0.2
+0.0
temperature
R2A 37C
-0.2
-0.1
-0.1
-0.2
-0.2
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.5
-0.2
+0.1
+0.0
-0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.1
-0.1
+0.2
-0.4
-0.2
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.0
-0.5
+0.0
-0.2
+0.1
carbon source
Protocatechuic Acid (C)
+0.2
+0.1
-0.3
-0.2
-0.2
stress
R2A with Cisplatin 0.001 mg/ml
-0.7
-0.1
+0.1
+0.3
-0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.3
-0.3
+0.1
+0.1
-0.0
stress
R2A with Nickel (II) chloride 0.35 mM
-0.2
-0.1
+0.2
-0.4
+0.4
carbon source
butyrate (C)
+0.2
-0.2
-0.0
+0.2
-0.2
carbon source
Hexanoic (C)
-0.1
+0.1
+0.1
+0.2
-0.4
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.2
-0.2
-0.0
+0.3
+0.1
carbon source
Pimelic (C)
-0.3
+0.1
+0.1
-0.2
+0.3
carbon source
succinate (C)
-0.3
+0.1
-0.1
+0.2
+0.1
carbon source
adipate (C)
-0.1
+0.0
+0.1
-0.3
+0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.3
+0.1
-0.2
+0.3
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
-0.1
-0.1
+0.5
-0.2
lb
LB
-0.5
-0.3
+0.3
+0.6
+0.3
stress
R2A with Nickel (II) chloride 0.35 mM
+0.3
-0.2
+0.1
-0.1
+0.1
carbon source
Carbon source Phenylacetic 2.5 mM
+0.2
+0.3
-0.1
-0.1
+0.1
carbon source
Disodium Glutarate (C)
-0.3
+0.2
+0.1
+0.3
+0.1
carbon source
Octanoic (C)
+0.2
+0.3
+0.1
-0.1
+0.0
nitrogen source
L-Glutamine (N)
+0.3
-0.3
+0.0
+0.4
+0.0
stress
R2A with Nickel (II) chloride 0.5 mM
-0.2
-0.3
-0.1
+0.4
+0.7
nitrogen source
D-Alanine (N)
+0.3
+0.1
-0.1
+0.3
+0.0
stress
R2A with nitrate 200 mM
+0.3
+0.1
+0.1
-0.0
+0.3
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RR42_RS04750
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