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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS04725 and RR42_RS04730 are separated by 222 nucleotides
RR42_RS04730 and RR42_RS04735 are separated by 105 nucleotides
RR42_RS04735 and RR42_RS04740 are separated by 258 nucleotides
RR42_RS04740 and RR42_RS04745 are separated by 438 nucleotides
RR42_RS04725: RR42_RS04725 - coproporphyrinogen III oxidase, at 1,051,492 to 1,052,403
_RS04725
RR42_RS04730: RR42_RS04730 - phosphoribosylamine--glycine ligase, at 1,052,626 to 1,053,894
_RS04730
RR42_RS04735: RR42_RS04735 - hypothetical protein, at 1,054,000 to 1,054,725
_RS04735
RR42_RS04740: RR42_RS04740 - ATP-binding protein, at 1,054,984 to 1,056,534
_RS04740
RR42_RS04745: RR42_RS04745 - uracil phosphoribosyltransferase, at 1,056,973 to 1,057,623
_RS04745
Group
Condition
RR42
_RS04725
RR42
_RS04730
RR42
_RS04735
RR42
_RS04740
RR42
_RS04745
lb
LB
N.D.
N.D.
-5.4
-0.5
-0.3
carbon source
L-Histidine (C)
N.D.
N.D.
-2.6
-0.1
-0.0
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
N.D.
N.D.
-1.6
-0.5
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
N.D.
N.D.
-1.5
-0.3
-0.3
stress
R2A with Cisplatin 0.001 mg/ml
N.D.
N.D.
-1.1
-0.7
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
N.D.
N.D.
-1.5
-0.1
-0.2
carbon source
Valeric (C)
N.D.
N.D.
-1.3
-0.2
+0.0
stress
R2A with Cephalothin 0.25 mg/ml
N.D.
N.D.
-1.3
-0.1
-0.1
nitrogen source
L-Serine (N)
N.D.
N.D.
-1.4
+0.1
-0.1
carbon source
Dodecandioic (C)
N.D.
N.D.
-1.5
+0.1
+0.1
stress
R2A with nitrate 200 mM
N.D.
N.D.
-1.7
+0.3
+0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
N.D.
N.D.
-0.9
-0.2
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
N.D.
N.D.
-1.4
+0.2
-0.1
nitrogen source
nitrate (N)
N.D.
N.D.
-1.2
+0.0
-0.1
carbon source
Heptanoic (C)
N.D.
N.D.
-0.9
-0.2
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
N.D.
N.D.
-1.0
-0.3
-0.0
stress
R2A with Chloride 300 mM
N.D.
N.D.
-1.4
+0.3
+0.2
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
N.D.
-1.0
+0.1
+0.2
stress
R2A with Vancomycin 0.5 mg/ml
N.D.
N.D.
+0.8
-0.3
-0.3
stress
R2A with Cobalt chloride 0.3 mM
N.D.
N.D.
+1.3
-0.0
-0.9
stress
R2A with Lomefloxacin 0.001 mM
N.D.
N.D.
+1.1
-0.4
-0.0
stress
R2A with Lomefloxacin 0.00075 mM
N.D.
N.D.
+1.3
-0.2
-0.3
stress
R2A with Thallium(I) acetate 0.001 mg/ml
N.D.
N.D.
+1.1
-0.0
-0.2
stress
R2A with Nickel (II) chloride 0.25 mM
N.D.
N.D.
+1.1
-0.1
+0.1
nitrogen source
L-Tryptophan (N)
N.D.
N.D.
+1.1
+0.2
+0.1
stress
R2A with Nickel (II) chloride 0.35 mM
N.D.
N.D.
+1.4
+0.3
-0.2
stress
R2A with Cobalt chloride 0.5 mM
N.D.
N.D.
+2.7
-0.3
-0.7
stress
R2A with A22 0.01 mg/ml
N.D.
N.D.
+1.8
+0.0
-0.0
stress
R2A with Nickel (II) chloride 0.5 mM
N.D.
N.D.
+4.5
-0.2
-0.3
stress
R2A with Nickel (II) chloride 0.35 mM
N.D.
N.D.
+5.2
-0.2
-0.1
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